Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 SBF1P1-201ENST00000444527 5631 ntBASIC14.37□□□□□ -0.11
CCDC58Q4VC31 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 AC245100.5-201ENST00000452108 331 ntBASIC14.37□□□□□ -0.11
CCDC58Q4VC31 FGFR3P6-201ENST00000457012 610 ntBASIC14.37□□□□□ -0.11
CCDC58Q4VC31 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 MIR3909-201ENST00000579518 119 ntBASIC14.37□□□□□ -0.11
CCDC58Q4VC31 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 AC117489.1-201ENST00000625169 3217 ntBASIC14.37□□□□□ -0.11
CCDC58Q4VC31 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC58Q4VC31 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 AL732292.2-201ENST00000609649 430 ntBASIC14.36□□□□□ -0.11
CCDC58Q4VC31 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 AL109954.1-202ENST00000564051 2148 ntBASIC14.36□□□□□ -0.11
CCDC58Q4VC31 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 AC136621.1-201ENST00000624017 2304 ntBASIC14.36□□□□□ -0.11
CCDC58Q4VC31 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC58Q4VC31 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 FOSL1P1-201ENST00000511041 816 ntBASIC14.35□□□□□ -0.11
CCDC58Q4VC31 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.35□□□□□ -0.11
CCDC58Q4VC31 AC008608.2-201ENST00000606089 416 ntBASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms