Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK4P57078 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK4P57078 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RIPK4P57078 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.82■□□□□ 0.92
RIPK4P57078 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK4P57078 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RIPK4P57078 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.82■□□□□ 0.92
RIPK4P57078 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC20.82■□□□□ 0.92
RIPK4P57078 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.82■□□□□ 0.92
RIPK4P57078 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.82■□□□□ 0.92
RIPK4P57078 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.82■□□□□ 0.92
RIPK4P57078 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
RIPK4P57078 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC20.82■□□□□ 0.92
RIPK4P57078 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK4P57078 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK4P57078 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC20.82■□□□□ 0.92
RIPK4P57078 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK4P57078 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC20.82■□□□□ 0.92
RIPK4P57078 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC20.82■□□□□ 0.92
RIPK4P57078 AL365203.3-201ENST00000609742 2057 ntBASIC20.82■□□□□ 0.92
RIPK4P57078 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK4P57078 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK4P57078 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
RIPK4P57078 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.81■□□□□ 0.92
RIPK4P57078 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RIPK4P57078 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RIPK4P57078 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 RAC2-202ENST00000401529 569 ntTSL 4 BASIC20.81■□□□□ 0.92
RIPK4P57078 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC20.81■□□□□ 0.92
RIPK4P57078 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
RIPK4P57078 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
RIPK4P57078 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.81■□□□□ 0.92
RIPK4P57078 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.81■□□□□ 0.92
RIPK4P57078 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
RIPK4P57078 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
RIPK4P57078 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC20.81■□□□□ 0.92
RIPK4P57078 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.81■□□□□ 0.92
RIPK4P57078 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK4P57078 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC20.81■□□□□ 0.92
RIPK4P57078 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
RIPK4P57078 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
RIPK4P57078 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC20.8■□□□□ 0.92
RIPK4P57078 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 PIN1P1-201ENST00000412108 996 ntBASIC20.8■□□□□ 0.92
RIPK4P57078 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.8■□□□□ 0.92
RIPK4P57078 TIMM17BP1-201ENST00000545713 516 ntBASIC20.8■□□□□ 0.92
RIPK4P57078 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 AC023310.3-201ENST00000557027 670 ntBASIC20.8■□□□□ 0.92
RIPK4P57078 AC100756.1-201ENST00000562736 682 ntBASIC20.8■□□□□ 0.92
RIPK4P57078 AC138749.3-201ENST00000567691 622 ntBASIC20.8■□□□□ 0.92
RIPK4P57078 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 AC116165.1-201ENST00000611806 668 ntBASIC20.8■□□□□ 0.92
RIPK4P57078 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC20.8■□□□□ 0.92
RIPK4P57078 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 AC007541.1-201ENST00000570282 1469 ntBASIC20.8■□□□□ 0.92
RIPK4P57078 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RIPK4P57078 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK4P57078 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
RIPK4P57078 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
RIPK4P57078 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
RIPK4P57078 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms