Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A4P53420 AL513523.2-202ENST00000427283 2040 ntBASIC16.76■□□□□ 0.27
COL4A4P53420 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A4P53420 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL4A4P53420 BNIP3P1-202ENST00000550043 1585 ntBASIC16.75■□□□□ 0.27
COL4A4P53420 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.75■□□□□ 0.27
COL4A4P53420 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.75■□□□□ 0.27
COL4A4P53420 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 NDUFV2P1-201ENST00000596415 907 ntBASIC16.75■□□□□ 0.27
COL4A4P53420 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.75■□□□□ 0.27
COL4A4P53420 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.75■□□□□ 0.27
COL4A4P53420 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.75■□□□□ 0.27
COL4A4P53420 AC138627.1-207ENST00000641560 1006 ntBASIC16.75■□□□□ 0.27
COL4A4P53420 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A4P53420 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
COL4A4P53420 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
COL4A4P53420 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 AC134407.2-201ENST00000625089 1978 ntBASIC16.75■□□□□ 0.27
COL4A4P53420 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A4P53420 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A4P53420 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
COL4A4P53420 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.75■□□□□ 0.27
COL4A4P53420 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 FAM197Y7-201ENST00000432892 766 ntBASIC16.75■□□□□ 0.27
COL4A4P53420 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A4P53420 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.75■□□□□ 0.27
COL4A4P53420 AKR7A2P1-201ENST00000460134 915 ntBASIC16.75■□□□□ 0.27
COL4A4P53420 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.75■□□□□ 0.27
COL4A4P53420 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.75■□□□□ 0.27
COL4A4P53420 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.75■□□□□ 0.27
COL4A4P53420 SPCS2P2-201ENST00000603270 608 ntBASIC16.75■□□□□ 0.27
COL4A4P53420 AC112504.1-201ENST00000623415 1841 ntBASIC16.75■□□□□ 0.27
COL4A4P53420 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A4P53420 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A4P53420 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
COL4A4P53420 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A4P53420 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A4P53420 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A4P53420 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A4P53420 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.74■□□□□ 0.27
COL4A4P53420 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL4A4P53420 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A4P53420 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A4P53420 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.74■□□□□ 0.27
COL4A4P53420 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.74■□□□□ 0.27
COL4A4P53420 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC16.74■□□□□ 0.27
COL4A4P53420 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A4P53420 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.74■□□□□ 0.27
COL4A4P53420 AL662844.4-201ENST00000606367 2838 ntBASIC16.74■□□□□ 0.27
COL4A4P53420 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A4P53420 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A4P53420 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.73■□□□□ 0.27
COL4A4P53420 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL4A4P53420 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A4P53420 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms