Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.56■□□□□ 0.24
PTPN9P43378 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
PTPN9P43378 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PTPN9P43378 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.56■□□□□ 0.24
PTPN9P43378 AL607033.1-201ENST00000623900 1599 ntBASIC16.55■□□□□ 0.24
PTPN9P43378 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN9P43378 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN9P43378 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN9P43378 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN9P43378 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN9P43378 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
PTPN9P43378 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
PTPN9P43378 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN9P43378 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.55■□□□□ 0.24
PTPN9P43378 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 AL645939.2-201ENST00000427340 991 ntBASIC16.55■□□□□ 0.24
PTPN9P43378 AC092183.1-201ENST00000469884 875 ntBASIC16.55■□□□□ 0.24
PTPN9P43378 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.55■□□□□ 0.24
PTPN9P43378 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.55■□□□□ 0.24
PTPN9P43378 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 NFIC-211ENST00000641145 8399 ntBASIC16.55■□□□□ 0.24
PTPN9P43378 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.55■□□□□ 0.24
PTPN9P43378 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTPN9P43378 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.55■□□□□ 0.24
PTPN9P43378 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
PTPN9P43378 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
PTPN9P43378 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PTPN9P43378 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PTPN9P43378 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN9P43378 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PTPN9P43378 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
PTPN9P43378 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.54■□□□□ 0.24
PTPN9P43378 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN9P43378 TARDBPP1-201ENST00000442013 1203 ntBASIC16.54■□□□□ 0.24
PTPN9P43378 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
PTPN9P43378 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.54■□□□□ 0.24
PTPN9P43378 AC097493.3-201ENST00000509725 367 ntBASIC16.54■□□□□ 0.24
PTPN9P43378 AC027369.6-201ENST00000525520 931 ntBASIC16.54■□□□□ 0.24
PTPN9P43378 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN9P43378 AL512361.1-201ENST00000554200 418 ntBASIC16.54■□□□□ 0.24
PTPN9P43378 AC025048.3-201ENST00000590609 569 ntBASIC16.54■□□□□ 0.24
PTPN9P43378 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.54■□□□□ 0.24
PTPN9P43378 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 AC005702.4-201ENST00000618393 416 ntBASIC16.54■□□□□ 0.24
PTPN9P43378 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.54■□□□□ 0.24
PTPN9P43378 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.54■□□□□ 0.24
PTPN9P43378 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN9P43378 AC105250.1-201ENST00000509378 2057 ntBASIC16.54■□□□□ 0.24
PTPN9P43378 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN9P43378 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms