Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.63■□□□□ 0.73
COL5A3P25940 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL5A3P25940 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC19.62■□□□□ 0.73
COL5A3P25940 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
COL5A3P25940 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL5A3P25940 AC091046.1-201ENST00000331871 207 ntBASIC19.62■□□□□ 0.73
COL5A3P25940 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC19.62■□□□□ 0.73
COL5A3P25940 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC19.62■□□□□ 0.73
COL5A3P25940 CYP46A4P-201ENST00000414953 267 ntBASIC19.62■□□□□ 0.73
COL5A3P25940 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC19.62■□□□□ 0.73
COL5A3P25940 AC114812.1-204ENST00000449669 728 ntBASIC19.62■□□□□ 0.73
COL5A3P25940 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC19.62■□□□□ 0.73
COL5A3P25940 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.62■□□□□ 0.73
COL5A3P25940 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.62■□□□□ 0.73
COL5A3P25940 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 AC069224.1-201ENST00000566372 1715 ntBASIC19.62■□□□□ 0.73
COL5A3P25940 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC19.62■□□□□ 0.73
COL5A3P25940 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
COL5A3P25940 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC19.62■□□□□ 0.73
COL5A3P25940 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC19.62■□□□□ 0.73
COL5A3P25940 FGFR3P5-201ENST00000564496 886 ntBASIC19.62■□□□□ 0.73
COL5A3P25940 MIR4706-201ENST00000582134 82 ntBASIC19.62■□□□□ 0.73
COL5A3P25940 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.62■□□□□ 0.73
COL5A3P25940 AC011676.5-201ENST00000624864 2660 ntBASIC19.62■□□□□ 0.73
COL5A3P25940 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A3P25940 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
COL5A3P25940 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC19.61■□□□□ 0.73
COL5A3P25940 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL5A3P25940 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A3P25940 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL5A3P25940 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A3P25940 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC19.61■□□□□ 0.73
COL5A3P25940 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
COL5A3P25940 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A3P25940 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A3P25940 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC19.61■□□□□ 0.73
COL5A3P25940 COX5BP1-201ENST00000507622 393 ntBASIC19.61■□□□□ 0.73
COL5A3P25940 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A3P25940 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC19.61■□□□□ 0.73
COL5A3P25940 AC008132.1-202ENST00000342005 1389 ntBASIC19.61■□□□□ 0.73
COL5A3P25940 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A3P25940 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A3P25940 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.61■□□□□ 0.73
COL5A3P25940 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A3P25940 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL5A3P25940 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL5A3P25940 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL5A3P25940 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 AC104457.1-201ENST00000401024 814 ntBASIC19.6■□□□□ 0.73
COL5A3P25940 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 ACTG1P2-201ENST00000415776 1125 ntBASIC19.6■□□□□ 0.73
COL5A3P25940 ACTG1P11-201ENST00000425411 1125 ntBASIC19.6■□□□□ 0.73
COL5A3P25940 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 AC245884.6-201ENST00000515672 1067 ntBASIC19.6■□□□□ 0.73
COL5A3P25940 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC19.6■□□□□ 0.73
COL5A3P25940 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL5A3P25940 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19.6■□□□□ 0.73
COL5A3P25940 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC19.6■□□□□ 0.73
COL5A3P25940 TBCB-211ENST00000589996 724 ntTSL 3 BASIC19.6■□□□□ 0.73
COL5A3P25940 OR10B1P-201ENST00000601666 907 ntBASIC19.6■□□□□ 0.73
COL5A3P25940 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC19.6■□□□□ 0.73
COL5A3P25940 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC19.6■□□□□ 0.73
COL5A3P25940 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.6■□□□□ 0.73
COL5A3P25940 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
COL5A3P25940 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A3P25940 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC19.6■□□□□ 0.73
COL5A3P25940 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL5A3P25940 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC19.59■□□□□ 0.73
COL5A3P25940 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC19.59■□□□□ 0.73
COL5A3P25940 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.59■□□□□ 0.73
COL5A3P25940 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms