Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.7■■□□□ 1.22
CUEDC1Q9NWM3 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CUEDC1Q9NWM3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CUEDC1Q9NWM3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.7■■□□□ 1.22
CUEDC1Q9NWM3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CUEDC1Q9NWM3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.69■■□□□ 1.22
CUEDC1Q9NWM3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 KRT8P33-201ENST00000508125 1423 ntBASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CUEDC1Q9NWM3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CUEDC1Q9NWM3 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CUEDC1Q9NWM3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.67■■□□□ 1.22
CUEDC1Q9NWM3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
CUEDC1Q9NWM3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CUEDC1Q9NWM3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.66■■□□□ 1.22
CUEDC1Q9NWM3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
CUEDC1Q9NWM3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.66■■□□□ 1.22
CUEDC1Q9NWM3 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.66■■□□□ 1.22
CUEDC1Q9NWM3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CUEDC1Q9NWM3 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 AC103834.1-201ENST00000520383 144 ntBASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUEDC1Q9NWM3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CUEDC1Q9NWM3 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
CUEDC1Q9NWM3 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.64■■□□□ 1.22
CUEDC1Q9NWM3 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.64■■□□□ 1.22
CUEDC1Q9NWM3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CUEDC1Q9NWM3 AC138932.3-201ENST00000567634 1902 ntBASIC22.64■■□□□ 1.21
CUEDC1Q9NWM3 AC142381.3-201ENST00000568208 1670 ntBASIC22.64■■□□□ 1.21
CUEDC1Q9NWM3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CUEDC1Q9NWM3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
CUEDC1Q9NWM3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.63■■□□□ 1.21
CUEDC1Q9NWM3 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CUEDC1Q9NWM3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CUEDC1Q9NWM3 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
CUEDC1Q9NWM3 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CUEDC1Q9NWM3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CUEDC1Q9NWM3 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
CUEDC1Q9NWM3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CUEDC1Q9NWM3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CUEDC1Q9NWM3 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CUEDC1Q9NWM3 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CUEDC1Q9NWM3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.62■■□□□ 1.21
CUEDC1Q9NWM3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.62■■□□□ 1.21
CUEDC1Q9NWM3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.62■■□□□ 1.21
CUEDC1Q9NWM3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 MIR4508-201ENST00000584178 70 ntBASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CUEDC1Q9NWM3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CUEDC1Q9NWM3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
CUEDC1Q9NWM3 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.6■■□□□ 1.21
CUEDC1Q9NWM3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.6■■□□□ 1.21
CUEDC1Q9NWM3 AC131212.1-201ENST00000613771 668 ntBASIC22.6■■□□□ 1.21
CUEDC1Q9NWM3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CUEDC1Q9NWM3 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.6■■□□□ 1.21
CUEDC1Q9NWM3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
CUEDC1Q9NWM3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
CUEDC1Q9NWM3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.59■■□□□ 1.21
CUEDC1Q9NWM3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CUEDC1Q9NWM3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CUEDC1Q9NWM3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.59■■□□□ 1.21
CUEDC1Q9NWM3 MIR6089-201ENST00000616698 64 ntBASIC22.59■■□□□ 1.21
CUEDC1Q9NWM3 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CUEDC1Q9NWM3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.21
CUEDC1Q9NWM3 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms