Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SNX5-217ENST00000606557 1087 ntBASIC17.43■□□□□ 0.38
PRKDCP78527 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKDCP78527 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PRKDCP78527 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PRKDCP78527 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKDCP78527 AL139393.2-201ENST00000608721 2025 ntBASIC17.43■□□□□ 0.38
PRKDCP78527 AC004911.1-201ENST00000416316 871 ntBASIC17.43■□□□□ 0.38
PRKDCP78527 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC17.43■□□□□ 0.38
PRKDCP78527 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PRKDCP78527 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PRKDCP78527 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.42■□□□□ 0.38
PRKDCP78527 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.42■□□□□ 0.38
PRKDCP78527 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC17.42■□□□□ 0.38
PRKDCP78527 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PRKDCP78527 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.41■□□□□ 0.38
PRKDCP78527 SP2-202ENST00000613139 908 ntTSL 5 BASIC17.41■□□□□ 0.38
PRKDCP78527 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PRKDCP78527 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PRKDCP78527 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PRKDCP78527 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PRKDCP78527 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PRKDCP78527 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKDCP78527 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC17.4■□□□□ 0.38
PRKDCP78527 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKDCP78527 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKDCP78527 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
PRKDCP78527 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKDCP78527 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKDCP78527 GATM-206ENST00000558336 1522 ntTSL 2 BASIC17.4■□□□□ 0.38
PRKDCP78527 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.4■□□□□ 0.38
PRKDCP78527 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKDCP78527 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKDCP78527 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PRKDCP78527 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKDCP78527 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKDCP78527 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKDCP78527 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.39■□□□□ 0.37
PRKDCP78527 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.39■□□□□ 0.37
PRKDCP78527 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKDCP78527 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKDCP78527 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKDCP78527 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKDCP78527 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC17.38■□□□□ 0.37
PRKDCP78527 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKDCP78527 SNAI3-AS1-204ENST00000567997 2048 ntBASIC17.38■□□□□ 0.37
PRKDCP78527 SERBP1P1-201ENST00000396021 1160 ntBASIC17.37■□□□□ 0.37
PRKDCP78527 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PRKDCP78527 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC17.37■□□□□ 0.37
PRKDCP78527 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.37■□□□□ 0.37
PRKDCP78527 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC17.37■□□□□ 0.37
PRKDCP78527 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.37■□□□□ 0.37
PRKDCP78527 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.37■□□□□ 0.37
PRKDCP78527 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PRKDCP78527 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC17.36■□□□□ 0.37
PRKDCP78527 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKDCP78527 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKDCP78527 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PRKDCP78527 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKDCP78527 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKDCP78527 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PRKDCP78527 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.35■□□□□ 0.37
PRKDCP78527 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC17.35■□□□□ 0.37
PRKDCP78527 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKDCP78527 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PRKDCP78527 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.35■□□□□ 0.37
PRKDCP78527 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKDCP78527 KRT18P10-201ENST00000388836 1287 ntBASIC17.34■□□□□ 0.37
PRKDCP78527 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PRKDCP78527 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.34■□□□□ 0.37
PRKDCP78527 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PRKDCP78527 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PRKDCP78527 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.34■□□□□ 0.37
PRKDCP78527 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
PRKDCP78527 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKDCP78527 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
PRKDCP78527 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.33■□□□□ 0.37
PRKDCP78527 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKDCP78527 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKDCP78527 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKDCP78527 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
PRKDCP78527 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PRKDCP78527 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKDCP78527 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.33■□□□□ 0.36
PRKDCP78527 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PRKDCP78527 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.32■□□□□ 0.36
PRKDCP78527 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.32■□□□□ 0.36
PRKDCP78527 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.32■□□□□ 0.36
PRKDCP78527 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17.32■□□□□ 0.36
PRKDCP78527 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PRKDCP78527 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC17.32■□□□□ 0.36
PRKDCP78527 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.32■□□□□ 0.36
PRKDCP78527 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC17.32■□□□□ 0.36
PRKDCP78527 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
PRKDCP78527 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.32■□□□□ 0.36
PRKDCP78527 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PRKDCP78527 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.32■□□□□ 0.36
PRKDCP78527 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.31■□□□□ 0.36
PRKDCP78527 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PRKDCP78527 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PRKDCP78527 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms