Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL1P09341 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CXCL1P09341 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL1P09341 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL1P09341 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CXCL1P09341 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL1P09341 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC18.15■□□□□ 0.5
CXCL1P09341 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC18.15■□□□□ 0.5
CXCL1P09341 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL1P09341 AC004812.2-201ENST00000611079 2094 ntBASIC18.15■□□□□ 0.5
CXCL1P09341 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC18.15■□□□□ 0.5
CXCL1P09341 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL1P09341 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL1P09341 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL1P09341 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL1P09341 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CXCL1P09341 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL1P09341 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CXCL1P09341 AL121603.2-201ENST00000557373 2117 ntBASIC18.14■□□□□ 0.5
CXCL1P09341 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CXCL1P09341 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL1P09341 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL1P09341 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL1P09341 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL1P09341 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL1P09341 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL1P09341 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL1P09341 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CXCL1P09341 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL1P09341 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL1P09341 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL1P09341 HNRNPLP2-201ENST00000568980 1570 ntBASIC18.13■□□□□ 0.49
CXCL1P09341 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL1P09341 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL1P09341 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL1P09341 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL1P09341 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CXCL1P09341 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL1P09341 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL1P09341 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL1P09341 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC18.12■□□□□ 0.49
CXCL1P09341 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC18.12■□□□□ 0.49
CXCL1P09341 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.12■□□□□ 0.49
CXCL1P09341 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.12■□□□□ 0.49
CXCL1P09341 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL1P09341 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL1P09341 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL1P09341 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL1P09341 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.11■□□□□ 0.49
CXCL1P09341 MIR6090-201ENST00000622481 60 ntBASIC18.11■□□□□ 0.49
CXCL1P09341 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC18.11■□□□□ 0.49
CXCL1P09341 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL1P09341 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL1P09341 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.11■□□□□ 0.49
CXCL1P09341 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.11■□□□□ 0.49
CXCL1P09341 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL1P09341 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL1P09341 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL1P09341 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CXCL1P09341 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.11■□□□□ 0.49
CXCL1P09341 AL137060.1-201ENST00000618151 2648 ntBASIC18.11■□□□□ 0.49
CXCL1P09341 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.1■□□□□ 0.49
CXCL1P09341 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.1■□□□□ 0.49
CXCL1P09341 LINC00526-201ENST00000581067 1875 ntBASIC18.1■□□□□ 0.49
CXCL1P09341 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL1P09341 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL1P09341 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CXCL1P09341 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL1P09341 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CXCL1P09341 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC18.09■□□□□ 0.49
CXCL1P09341 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL1P09341 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL1P09341 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC18.09■□□□□ 0.49
CXCL1P09341 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL1P09341 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL1P09341 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL1P09341 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL1P09341 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
CXCL1P09341 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.49
CXCL1P09341 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL1P09341 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.08■□□□□ 0.48
CXCL1P09341 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL1P09341 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL1P09341 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL1P09341 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CXCL1P09341 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL1P09341 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL1P09341 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL1P09341 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL1P09341 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CXCL1P09341 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.07■□□□□ 0.48
CXCL1P09341 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL1P09341 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.07■□□□□ 0.48
CXCL1P09341 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CXCL1P09341 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL1P09341 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL1P09341 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CXCL1P09341 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.06■□□□□ 0.48
CXCL1P09341 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CXCL1P09341 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms