Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CACNA1AO00555 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CACNA1AO00555 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.78■■□□□ 1.24
CACNA1AO00555 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CACNA1AO00555 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.78■■□□□ 1.24
CACNA1AO00555 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC22.78■■□□□ 1.24
CACNA1AO00555 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CACNA1AO00555 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.77■■□□□ 1.24
CACNA1AO00555 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CACNA1AO00555 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.77■■□□□ 1.24
CACNA1AO00555 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC22.77■■□□□ 1.24
CACNA1AO00555 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CACNA1AO00555 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.24
CACNA1AO00555 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
CACNA1AO00555 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.77■■□□□ 1.24
CACNA1AO00555 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.77■■□□□ 1.24
CACNA1AO00555 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
CACNA1AO00555 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CACNA1AO00555 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CACNA1AO00555 SNX5-217ENST00000606557 1087 ntBASIC22.76■■□□□ 1.23
CACNA1AO00555 AC011298.3-201ENST00000615796 283 ntBASIC22.76■■□□□ 1.23
CACNA1AO00555 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
CACNA1AO00555 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.76■■□□□ 1.23
CACNA1AO00555 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC22.76■■□□□ 1.23
CACNA1AO00555 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CACNA1AO00555 RAB43-208ENST00000615093 783 ntTSL 5 BASIC22.75■■□□□ 1.23
CACNA1AO00555 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CACNA1AO00555 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
CACNA1AO00555 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC22.75■■□□□ 1.23
CACNA1AO00555 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
CACNA1AO00555 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CACNA1AO00555 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CACNA1AO00555 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CACNA1AO00555 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
CACNA1AO00555 SERBP1P1-201ENST00000396021 1160 ntBASIC22.74■■□□□ 1.23
CACNA1AO00555 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
CACNA1AO00555 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC22.74■■□□□ 1.23
CACNA1AO00555 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
CACNA1AO00555 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC22.73■■□□□ 1.23
CACNA1AO00555 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
CACNA1AO00555 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
CACNA1AO00555 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CACNA1AO00555 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.73■■□□□ 1.23
CACNA1AO00555 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
CACNA1AO00555 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
CACNA1AO00555 AC104771.1-201ENST00000603335 964 ntBASIC22.73■■□□□ 1.23
CACNA1AO00555 AP002414.2-202ENST00000590929 1450 ntBASIC22.73■■□□□ 1.23
CACNA1AO00555 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1AO00555 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1AO00555 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.72■■□□□ 1.23
CACNA1AO00555 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
CACNA1AO00555 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC22.72■■□□□ 1.23
CACNA1AO00555 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CACNA1AO00555 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC22.71■■□□□ 1.23
CACNA1AO00555 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.71■■□□□ 1.23
CACNA1AO00555 AC099791.1-201ENST00000416440 715 ntBASIC22.71■■□□□ 1.23
CACNA1AO00555 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CACNA1AO00555 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
CACNA1AO00555 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC22.71■■□□□ 1.23
CACNA1AO00555 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CACNA1AO00555 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.7■■□□□ 1.22
CACNA1AO00555 ME3-201ENST00000323418 1068 ntTSL 5 BASIC22.69■■□□□ 1.22
CACNA1AO00555 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC22.69■■□□□ 1.22
CACNA1AO00555 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CACNA1AO00555 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC22.69■■□□□ 1.22
CACNA1AO00555 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CACNA1AO00555 AC123595.1-201ENST00000440769 1046 ntBASIC22.68■■□□□ 1.22
CACNA1AO00555 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC22.68■■□□□ 1.22
CACNA1AO00555 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CACNA1AO00555 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CACNA1AO00555 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC22.68■■□□□ 1.22
CACNA1AO00555 AL138724.1-201ENST00000606771 1088 ntBASIC22.68■■□□□ 1.22
CACNA1AO00555 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.67■■□□□ 1.22
CACNA1AO00555 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC22.67■■□□□ 1.22
CACNA1AO00555 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.67■■□□□ 1.22
CACNA1AO00555 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.67■■□□□ 1.22
CACNA1AO00555 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.67■■□□□ 1.22
CACNA1AO00555 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CACNA1AO00555 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CACNA1AO00555 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CACNA1AO00555 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
CACNA1AO00555 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
CACNA1AO00555 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC22.66■■□□□ 1.22
CACNA1AO00555 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC22.66■■□□□ 1.22
CACNA1AO00555 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
CACNA1AO00555 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC22.65■■□□□ 1.22
CACNA1AO00555 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC22.65■■□□□ 1.22
CACNA1AO00555 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.65■■□□□ 1.22
CACNA1AO00555 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CACNA1AO00555 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CACNA1AO00555 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
CACNA1AO00555 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CACNA1AO00555 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.64■■□□□ 1.22
CACNA1AO00555 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC22.64■■□□□ 1.22
CACNA1AO00555 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
CACNA1AO00555 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
CACNA1AO00555 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
CACNA1AO00555 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CACNA1AO00555 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CACNA1AO00555 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms