Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 AL135744.1-201ENST00000565098 629 ntBASIC12.97□□□□□ -0.33
FOXA2Q9Y261 SPDYE9P-201ENST00000570642 692 ntBASIC12.97□□□□□ -0.33
FOXA2Q9Y261 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 SPDYE10P-202ENST00000612005 668 ntBASIC12.97□□□□□ -0.33
FOXA2Q9Y261 SPDYE8P-202ENST00000612377 668 ntBASIC12.97□□□□□ -0.33
FOXA2Q9Y261 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 AC023157.3-201ENST00000619086 2088 ntBASIC12.97□□□□□ -0.33
FOXA2Q9Y261 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 BSG-215ENST00000618006 1329 ntTSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.96□□□□□ -0.33
FOXA2Q9Y261 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 TIMM8BP1-201ENST00000452384 211 ntBASIC12.96□□□□□ -0.33
FOXA2Q9Y261 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 AC112482.1-201ENST00000492080 688 ntBASIC12.96□□□□□ -0.33
FOXA2Q9Y261 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 YBX1P5-201ENST00000509441 847 ntBASIC12.96□□□□□ -0.33
FOXA2Q9Y261 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 MIR4469-201ENST00000583919 79 ntBASIC12.96□□□□□ -0.33
FOXA2Q9Y261 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 AC026120.1-201ENST00000611536 926 ntBASIC12.96□□□□□ -0.33
FOXA2Q9Y261 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
FOXA2Q9Y261 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
FOXA2Q9Y261 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms