Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 AC079140.1-201ENST00000508039 487 ntBASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 AC040169.1-201ENST00000565382 521 ntBASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMCH1Q9UPQ0 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 TNRC18P2-201ENST00000417666 2714 ntBASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 AC112693.3-201ENST00000624819 1983 ntBASIC18.83■□□□□ 0.61
LIMCH1Q9UPQ0 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 HLA-H-201ENST00000383620 1096 ntBASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 KRT8P23-201ENST00000560090 1207 ntBASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMCH1Q9UPQ0 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 OVCH1-AS1-204ENST00000641955 5529 ntBASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 AC026396.1-201ENST00000419388 421 ntBASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.82■□□□□ 0.6
LIMCH1Q9UPQ0 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 CYP4F24P-201ENST00000586049 1580 ntBASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 YBX2P1-201ENST00000394192 760 ntBASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 MIR940-201ENST00000401276 94 ntBASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 AL139010.1-201ENST00000454878 894 ntBASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 C20orf181-201ENST00000623918 480 ntBASIC18.81■□□□□ 0.6
LIMCH1Q9UPQ0 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms