Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.71■□□□□ 0.43
BLOC1S4Q9NUP1 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BLOC1S4Q9NUP1 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.71■□□□□ 0.43
BLOC1S4Q9NUP1 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BLOC1S4Q9NUP1 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
BLOC1S4Q9NUP1 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BLOC1S4Q9NUP1 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
BLOC1S4Q9NUP1 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.71■□□□□ 0.42
BLOC1S4Q9NUP1 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
BLOC1S4Q9NUP1 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
BLOC1S4Q9NUP1 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 FAM86GP-201ENST00000448322 971 ntBASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AC010336.2-201ENST00000564226 506 ntBASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AC025048.3-201ENST00000590609 569 ntBASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AL158211.3-201ENST00000607385 239 ntBASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AC005702.4-201ENST00000618393 416 ntBASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 AC013268.4-201ENST00000637413 2228 ntBASIC17.7■□□□□ 0.42
BLOC1S4Q9NUP1 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 AL844908.2-201ENST00000609461 460 ntBASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 AC127383.1-201ENST00000444697 1800 ntBASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.69■□□□□ 0.42
BLOC1S4Q9NUP1 AC073347.1-201ENST00000421633 2643 ntBASIC17.68■□□□□ 0.42
BLOC1S4Q9NUP1 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.68■□□□□ 0.42
BLOC1S4Q9NUP1 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BLOC1S4Q9NUP1 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BLOC1S4Q9NUP1 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BLOC1S4Q9NUP1 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BLOC1S4Q9NUP1 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms