Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 MIR4453-201ENST00000584019 89 ntBASIC17.1■□□□□ 0.33
SIX2Q9NPC8 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 AP006288.1-201ENST00000446065 395 ntBASIC17.09■□□□□ 0.33
SIX2Q9NPC8 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 AC092865.5-201ENST00000545435 363 ntBASIC17.09■□□□□ 0.33
SIX2Q9NPC8 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 AP001059.3-201ENST00000619053 235 ntBASIC17.09■□□□□ 0.33
SIX2Q9NPC8 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SIX2Q9NPC8 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SIX2Q9NPC8 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
SIX2Q9NPC8 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.08■□□□□ 0.33
SIX2Q9NPC8 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SIX2Q9NPC8 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.08■□□□□ 0.33
SIX2Q9NPC8 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.08■□□□□ 0.33
SIX2Q9NPC8 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.08■□□□□ 0.32
SIX2Q9NPC8 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 AC254562.1-201ENST00000417586 456 ntBASIC17.08■□□□□ 0.32
SIX2Q9NPC8 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 AC134684.3-201ENST00000641758 218 ntBASIC17.08■□□□□ 0.32
SIX2Q9NPC8 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 TNRC18P2-201ENST00000417666 2714 ntBASIC17.08■□□□□ 0.32
SIX2Q9NPC8 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SIX2Q9NPC8 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms