Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 RPS2P1-201ENST00000434010 821 ntBASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 AC010654.1-201ENST00000615722 808 ntBASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
CHMP1AQ9HD42 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 AC012569.1-201ENST00000591191 1524 ntBASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 MIR1224-201ENST00000408193 85 ntBASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms