Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 AC074044.1-201ENST00000609673 707 ntBASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
TRAIPQ9BWF2 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 AL691432.1-201ENST00000596308 1422 ntBASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 AC055876.2-201ENST00000531834 546 ntBASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 AL109936.8-201ENST00000641772 604 ntBASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
TRAIPQ9BWF2 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 GK-202ENST00000378941 458 ntTSL 3 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 CHCHD2P3-201ENST00000603038 451 ntBASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms