Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
ABCA3Q99758 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ABCA3Q99758 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.7■□□□□ 0.9
ABCA3Q99758 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.7■□□□□ 0.9
ABCA3Q99758 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ABCA3Q99758 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC20.7■□□□□ 0.9
ABCA3Q99758 MIR648-201ENST00000385046 94 ntBASIC20.7■□□□□ 0.9
ABCA3Q99758 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC20.7■□□□□ 0.9
ABCA3Q99758 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ABCA3Q99758 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC20.7■□□□□ 0.9
ABCA3Q99758 CTBP2P4-201ENST00000513884 920 ntBASIC20.7■□□□□ 0.9
ABCA3Q99758 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ABCA3Q99758 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC20.7■□□□□ 0.9
ABCA3Q99758 BNIP3P13-201ENST00000599968 566 ntBASIC20.7■□□□□ 0.9
ABCA3Q99758 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ABCA3Q99758 AC025181.2-201ENST00000606994 802 ntBASIC20.7■□□□□ 0.9
ABCA3Q99758 AC100757.4-201ENST00000626934 759 ntBASIC20.7■□□□□ 0.9
ABCA3Q99758 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC20.7■□□□□ 0.9
ABCA3Q99758 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC20.7■□□□□ 0.9
ABCA3Q99758 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.7■□□□□ 0.9
ABCA3Q99758 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.69■□□□□ 0.9
ABCA3Q99758 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20.69■□□□□ 0.9
ABCA3Q99758 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.69■□□□□ 0.9
ABCA3Q99758 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.69■□□□□ 0.9
ABCA3Q99758 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC20.69■□□□□ 0.9
ABCA3Q99758 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC20.69■□□□□ 0.9
ABCA3Q99758 AC068587.8-201ENST00000641239 219 ntBASIC20.69■□□□□ 0.9
ABCA3Q99758 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA3Q99758 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ABCA3Q99758 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 AC114812.1-204ENST00000449669 728 ntBASIC20.68■□□□□ 0.9
ABCA3Q99758 RNMTL1P1-201ENST00000454103 560 ntBASIC20.68■□□□□ 0.9
ABCA3Q99758 CFL1-206ENST00000527344 962 ntTSL 2 BASIC20.68■□□□□ 0.9
ABCA3Q99758 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
ABCA3Q99758 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC20.68■□□□□ 0.9
ABCA3Q99758 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC20.68■□□□□ 0.9
ABCA3Q99758 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.68■□□□□ 0.9
ABCA3Q99758 KRT8P4-201ENST00000509735 1454 ntBASIC20.68■□□□□ 0.9
ABCA3Q99758 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC20.68■□□□□ 0.9
ABCA3Q99758 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA3Q99758 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
ABCA3Q99758 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC20.67■□□□□ 0.9
ABCA3Q99758 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 PFN2-202ENST00000423691 911 ntTSL 2 BASIC20.67■□□□□ 0.9
ABCA3Q99758 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC20.67■□□□□ 0.9
ABCA3Q99758 AC114501.1-201ENST00000445949 172 ntBASIC20.67■□□□□ 0.9
ABCA3Q99758 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC20.67■□□□□ 0.9
ABCA3Q99758 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.67■□□□□ 0.9
ABCA3Q99758 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 ANKRD30BP2-201ENST00000435744 1610 ntBASIC20.67■□□□□ 0.9
ABCA3Q99758 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC20.67■□□□□ 0.9
ABCA3Q99758 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC20.67■□□□□ 0.9
ABCA3Q99758 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
ABCA3Q99758 AL008707.1-201ENST00000422498 534 ntBASIC20.67■□□□□ 0.9
ABCA3Q99758 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC20.67■□□□□ 0.9
ABCA3Q99758 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC20.67■□□□□ 0.9
ABCA3Q99758 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC20.67■□□□□ 0.9
ABCA3Q99758 KRT18P66-201ENST00000452970 1269 ntBASIC20.67■□□□□ 0.9
ABCA3Q99758 AC005740.2-201ENST00000511085 419 ntBASIC20.67■□□□□ 0.9
ABCA3Q99758 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.67■□□□□ 0.9
ABCA3Q99758 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA3Q99758 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ABCA3Q99758 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ABCA3Q99758 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ABCA3Q99758 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ABCA3Q99758 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ABCA3Q99758 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ABCA3Q99758 AC006449.6-201ENST00000612330 2296 ntBASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms