Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 CALY-203ENST00000368558 825 ntTSL 5 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 HAUS4P1-201ENST00000406739 1145 ntBASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 AC092580.3-201ENST00000430932 139 ntBASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 AC069120.2-201ENST00000524091 540 ntBASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CHMP4CQ96CF2 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 INGX-202ENST00000489074 768 ntBASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 AC027369.6-201ENST00000525520 931 ntBASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 AC140878.1-201ENST00000565277 250 ntBASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHMP4CQ96CF2 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 AC112504.1-201ENST00000623415 1841 ntBASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 HLA-H-201ENST00000383620 1096 ntBASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms