Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 TUBB3P1-201ENST00000405796 1332 ntBASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 MRPS18AP1-201ENST00000414458 589 ntBASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 AC015911.4-201ENST00000588022 1070 ntBASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 AC027307.3-201ENST00000594262 1100 ntBASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM3Q8TF72 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 AC090616.6-203ENST00000579186 1945 ntBASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 TERF1P3-201ENST00000505638 1227 ntBASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 AL512356.2-201ENST00000546955 174 ntBASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 MIR4313-201ENST00000580760 101 ntBASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SHROOM3Q8TF72 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 CNN2P2-201ENST00000443536 909 ntBASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 CNN2P3-201ENST00000450201 906 ntBASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 AC027369.6-201ENST00000525520 931 ntBASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 AL136317.3-201ENST00000618497 906 ntBASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.22■□□□□ 0.19
SHROOM3Q8TF72 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms