Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE4Q8N205 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE4Q8N205 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.74
SYNE4Q8N205 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.74
SYNE4Q8N205 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.7■□□□□ 0.74
SYNE4Q8N205 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE4Q8N205 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 AMT-233ENST00000636522 1620 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 APOA1-205ENST00000375329 927 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 C1QBPP1-201ENST00000400117 770 ntBASIC19.69■□□□□ 0.74
SYNE4Q8N205 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 AC093433.1-201ENST00000458048 571 ntBASIC19.69■□□□□ 0.74
SYNE4Q8N205 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 LTB4R2-202ENST00000528054 3092 ntBASIC19.69■□□□□ 0.74
SYNE4Q8N205 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE4Q8N205 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SYNE4Q8N205 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms