Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
H3F3AP84243 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
H3F3AP84243 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
H3F3AP84243 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
H3F3AP84243 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
H3F3AP84243 FO538757.1-201ENST00000623083 1397 ntBASIC14.31□□□□□ -0.12
H3F3AP84243 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
H3F3AP84243 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.31□□□□□ -0.12
H3F3AP84243 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
H3F3AP84243 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.31□□□□□ -0.12
H3F3AP84243 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
H3F3AP84243 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
H3F3AP84243 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
H3F3AP84243 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.3□□□□□ -0.12
H3F3AP84243 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
H3F3AP84243 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.3□□□□□ -0.12
H3F3AP84243 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
H3F3AP84243 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.3□□□□□ -0.12
H3F3AP84243 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
H3F3AP84243 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
H3F3AP84243 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
H3F3AP84243 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.3□□□□□ -0.12
H3F3AP84243 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.3□□□□□ -0.12
H3F3AP84243 RFPL4AP1-201ENST00000530883 850 ntBASIC14.3□□□□□ -0.12
H3F3AP84243 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
H3F3AP84243 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.3□□□□□ -0.12
H3F3AP84243 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.3□□□□□ -0.12
H3F3AP84243 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
H3F3AP84243 LINC02199-201ENST00000506655 2702 ntBASIC14.3□□□□□ -0.12
H3F3AP84243 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
H3F3AP84243 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.3□□□□□ -0.12
H3F3AP84243 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
H3F3AP84243 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
H3F3AP84243 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.3□□□□□ -0.12
H3F3AP84243 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.3□□□□□ -0.12
H3F3AP84243 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
H3F3AP84243 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
H3F3AP84243 AP005117.1-202ENST00000581724 1908 ntBASIC14.29□□□□□ -0.12
H3F3AP84243 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
H3F3AP84243 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.29□□□□□ -0.12
H3F3AP84243 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.29□□□□□ -0.12
H3F3AP84243 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
H3F3AP84243 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.29□□□□□ -0.12
H3F3AP84243 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.29□□□□□ -0.12
H3F3AP84243 AC092580.3-201ENST00000430932 139 ntBASIC14.29□□□□□ -0.12
H3F3AP84243 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
H3F3AP84243 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.29□□□□□ -0.12
H3F3AP84243 AC097493.3-201ENST00000509725 367 ntBASIC14.29□□□□□ -0.12
H3F3AP84243 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.29□□□□□ -0.12
H3F3AP84243 AL138828.2-201ENST00000615812 383 ntBASIC14.29□□□□□ -0.12
H3F3AP84243 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.29□□□□□ -0.12
H3F3AP84243 SPDYE12P-201ENST00000618416 771 ntBASIC14.29□□□□□ -0.12
H3F3AP84243 AC073592.8-201ENST00000624126 511 ntBASIC14.29□□□□□ -0.12
H3F3AP84243 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
H3F3AP84243 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
H3F3AP84243 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
H3F3AP84243 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.29□□□□□ -0.12
H3F3AP84243 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.29□□□□□ -0.12
H3F3AP84243 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.29□□□□□ -0.12
H3F3AP84243 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
H3F3AP84243 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.29□□□□□ -0.12
H3F3AP84243 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
H3F3AP84243 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms