Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC12.09□□□□□ -0.47
FOXA3P55318 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
FOXA3P55318 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA3P55318 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.47
FOXA3P55318 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
FOXA3P55318 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.08□□□□□ -0.47
FOXA3P55318 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
FOXA3P55318 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.47
FOXA3P55318 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
FOXA3P55318 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 AC232323.1-201ENST00000540724 2099 ntBASIC12.08□□□□□ -0.48
FOXA3P55318 REXO1L5P-201ENST00000622260 2098 ntBASIC12.08□□□□□ -0.48
FOXA3P55318 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 TSPY5P-201ENST00000426936 936 ntBASIC12.08□□□□□ -0.48
FOXA3P55318 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC12.08□□□□□ -0.48
FOXA3P55318 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC12.08□□□□□ -0.48
FOXA3P55318 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC12.08□□□□□ -0.48
FOXA3P55318 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC12.08□□□□□ -0.48
FOXA3P55318 CYB561-217ENST00000582997 877 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
FOXA3P55318 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC12.08□□□□□ -0.48
FOXA3P55318 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA3P55318 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
FOXA3P55318 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
FOXA3P55318 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
FOXA3P55318 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.07□□□□□ -0.48
FOXA3P55318 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC12.07□□□□□ -0.48
FOXA3P55318 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
FOXA3P55318 TLE1-202ENST00000376484 666 ntTSL 3 BASIC12.07□□□□□ -0.48
FOXA3P55318 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC12.07□□□□□ -0.48
FOXA3P55318 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 ABR-204ENST00000543210 1049 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC12.07□□□□□ -0.48
FOXA3P55318 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 ABR-217ENST00000572441 563 ntTSL 4 BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms