Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.5■□□□□ 0.07
FOXA1P55317 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.5■□□□□ 0.07
FOXA1P55317 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.5■□□□□ 0.07
FOXA1P55317 AC027307.2-201ENST00000591252 911 ntBASIC15.5■□□□□ 0.07
FOXA1P55317 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.5■□□□□ 0.07
FOXA1P55317 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA1P55317 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
FOXA1P55317 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA1P55317 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA1P55317 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.49■□□□□ 0.07
FOXA1P55317 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
FOXA1P55317 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA1P55317 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA1P55317 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
FOXA1P55317 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 TFAMP1-201ENST00000412727 736 ntBASIC15.49■□□□□ 0.07
FOXA1P55317 MED15P5-201ENST00000423150 992 ntBASIC15.49■□□□□ 0.07
FOXA1P55317 AL671277.1-201ENST00000429656 993 ntBASIC15.49■□□□□ 0.07
FOXA1P55317 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.49■□□□□ 0.07
FOXA1P55317 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.49■□□□□ 0.07
FOXA1P55317 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.49■□□□□ 0.07
FOXA1P55317 AC243562.2-201ENST00000561247 970 ntBASIC15.49■□□□□ 0.07
FOXA1P55317 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.49■□□□□ 0.07
FOXA1P55317 AC106730.1-201ENST00000566722 1090 ntBASIC15.49■□□□□ 0.07
FOXA1P55317 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA1P55317 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
FOXA1P55317 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
FOXA1P55317 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.49■□□□□ 0.07
FOXA1P55317 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA1P55317 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
FOXA1P55317 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA1P55317 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA1P55317 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA1P55317 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.49■□□□□ 0.07
FOXA1P55317 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
FOXA1P55317 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.48■□□□□ 0.07
FOXA1P55317 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 AKAP8P1-201ENST00000434743 1349 ntBASIC15.48■□□□□ 0.07
FOXA1P55317 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.48■□□□□ 0.07
FOXA1P55317 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.48■□□□□ 0.07
FOXA1P55317 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
FOXA1P55317 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.48■□□□□ 0.07
FOXA1P55317 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
FOXA1P55317 AC023274.1-201ENST00000418278 595 ntBASIC15.48■□□□□ 0.07
FOXA1P55317 ADH5P3-201ENST00000433842 1137 ntBASIC15.48■□□□□ 0.07
FOXA1P55317 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.48■□□□□ 0.07
FOXA1P55317 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.48■□□□□ 0.07
FOXA1P55317 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
FOXA1P55317 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.48■□□□□ 0.07
FOXA1P55317 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 AC024267.1-201ENST00000582320 895 ntBASIC15.48■□□□□ 0.07
FOXA1P55317 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
FOXA1P55317 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.48■□□□□ 0.07
FOXA1P55317 AC027601.4-201ENST00000611259 610 ntBASIC15.48■□□□□ 0.07
FOXA1P55317 AC120114.3-201ENST00000611923 658 ntBASIC15.48■□□□□ 0.07
FOXA1P55317 BX640515.1-201ENST00000617215 977 ntBASIC15.48■□□□□ 0.07
FOXA1P55317 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.48■□□□□ 0.07
FOXA1P55317 AC008267.7-201ENST00000624570 1194 ntBASIC15.48■□□□□ 0.07
FOXA1P55317 AC092902.6-201ENST00000641783 218 ntBASIC15.48■□□□□ 0.07
FOXA1P55317 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms