Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
CXCL12P48061 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
CXCL12P48061 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
CXCL12P48061 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CXCL12P48061 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.75■□□□□ 0.11
CXCL12P48061 MIR1202-201ENST00000408529 83 ntBASIC15.75■□□□□ 0.11
CXCL12P48061 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
CXCL12P48061 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC15.75■□□□□ 0.11
CXCL12P48061 AC091804.1-201ENST00000486888 567 ntBASIC15.75■□□□□ 0.11
CXCL12P48061 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.75■□□□□ 0.11
CXCL12P48061 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.75■□□□□ 0.11
CXCL12P48061 RERG-205ENST00000537647 935 ntTSL 2 BASIC15.75■□□□□ 0.11
CXCL12P48061 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.75■□□□□ 0.11
CXCL12P48061 AP006547.1-201ENST00000563435 692 ntBASIC15.75■□□□□ 0.11
CXCL12P48061 AC015910.1-201ENST00000579400 975 ntBASIC15.75■□□□□ 0.11
CXCL12P48061 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC15.75■□□□□ 0.11
CXCL12P48061 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CXCL12P48061 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.75■□□□□ 0.11
CXCL12P48061 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CXCL12P48061 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.75■□□□□ 0.11
CXCL12P48061 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CXCL12P48061 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
CXCL12P48061 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 AC015818.8-201ENST00000587907 1519 ntBASIC15.74■□□□□ 0.11
CXCL12P48061 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 HLA-A-202ENST00000376806 1854 ntBASIC15.74■□□□□ 0.11
CXCL12P48061 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.74■□□□□ 0.11
CXCL12P48061 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
CXCL12P48061 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CXCL12P48061 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC15.74■□□□□ 0.11
CXCL12P48061 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC15.74■□□□□ 0.11
CXCL12P48061 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 RNA5SP486-201ENST00000515961 83 ntBASIC15.74■□□□□ 0.11
CXCL12P48061 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CXCL12P48061 KC6-205ENST00000599934 556 ntTSL 4 BASIC15.74■□□□□ 0.11
CXCL12P48061 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
CXCL12P48061 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC15.74■□□□□ 0.11
CXCL12P48061 AC015967.2-201ENST00000624092 234 ntBASIC15.74■□□□□ 0.11
CXCL12P48061 AC006435.4-201ENST00000625037 234 ntBASIC15.74■□□□□ 0.11
CXCL12P48061 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
CXCL12P48061 AL356737.1-201ENST00000634391 234 ntBASIC15.74■□□□□ 0.11
CXCL12P48061 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.74■□□□□ 0.11
CXCL12P48061 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CXCL12P48061 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.74■□□□□ 0.11
CXCL12P48061 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CXCL12P48061 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 AC005915.1-201ENST00000624912 2018 ntBASIC15.73■□□□□ 0.11
CXCL12P48061 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 AC134407.2-201ENST00000625089 1978 ntBASIC15.73■□□□□ 0.11
CXCL12P48061 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CXCL12P48061 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms