Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SCN4AP35499 WDR7-208ENST00000589935 544 ntTSL 4 BASIC18.44■□□□□ 0.54
SCN4AP35499 IRF3-215ENST00000596822 823 ntTSL 3 BASIC18.44■□□□□ 0.54
SCN4AP35499 AL353770.1-201ENST00000614915 403 ntBASIC18.44■□□□□ 0.54
SCN4AP35499 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SCN4AP35499 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SCN4AP35499 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SCN4AP35499 AC004899.1-201ENST00000424687 1714 ntBASIC18.44■□□□□ 0.54
SCN4AP35499 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN4AP35499 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN4AP35499 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SCN4AP35499 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SCN4AP35499 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN4AP35499 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
SCN4AP35499 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC18.44■□□□□ 0.54
SCN4AP35499 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN4AP35499 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC18.44■□□□□ 0.54
SCN4AP35499 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SCN4AP35499 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC18.44■□□□□ 0.54
SCN4AP35499 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC18.44■□□□□ 0.54
SCN4AP35499 AL160314.3-201ENST00000556041 767 ntBASIC18.44■□□□□ 0.54
SCN4AP35499 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC18.44■□□□□ 0.54
SCN4AP35499 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.44■□□□□ 0.54
SCN4AP35499 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN4AP35499 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN4AP35499 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN4AP35499 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.44■□□□□ 0.54
SCN4AP35499 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC18.43■□□□□ 0.54
SCN4AP35499 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SCN4AP35499 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.43■□□□□ 0.54
SCN4AP35499 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 CHMP1AP1-201ENST00000445563 662 ntBASIC18.43■□□□□ 0.54
SCN4AP35499 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC18.43■□□□□ 0.54
SCN4AP35499 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC18.43■□□□□ 0.54
SCN4AP35499 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.43■□□□□ 0.54
SCN4AP35499 AC005357.2-202ENST00000590507 1060 ntBASIC18.43■□□□□ 0.54
SCN4AP35499 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC18.43■□□□□ 0.54
SCN4AP35499 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SCN4AP35499 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN4AP35499 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.43■□□□□ 0.54
SCN4AP35499 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SCN4AP35499 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.42■□□□□ 0.54
SCN4AP35499 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.42■□□□□ 0.54
SCN4AP35499 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
SCN4AP35499 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.42■□□□□ 0.54
SCN4AP35499 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN4AP35499 AC006453.1-201ENST00000636037 1257 ntBASIC18.42■□□□□ 0.54
SCN4AP35499 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SCN4AP35499 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SCN4AP35499 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SCN4AP35499 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN4AP35499 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 KRT8P29-201ENST00000420409 1371 ntBASIC18.42■□□□□ 0.54
SCN4AP35499 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN4AP35499 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.42■□□□□ 0.54
SCN4AP35499 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC18.42■□□□□ 0.54
SCN4AP35499 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.42■□□□□ 0.54
SCN4AP35499 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.42■□□□□ 0.54
SCN4AP35499 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN4AP35499 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN4AP35499 MIR4783-201ENST00000580343 82 ntBASIC18.42■□□□□ 0.54
SCN4AP35499 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.42■□□□□ 0.54
SCN4AP35499 AC005324.6-201ENST00000587972 613 ntBASIC18.42■□□□□ 0.54
SCN4AP35499 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.42■□□□□ 0.54
SCN4AP35499 AC012044.1-201ENST00000603431 297 ntBASIC18.42■□□□□ 0.54
SCN4AP35499 AC025181.2-201ENST00000606994 802 ntBASIC18.42■□□□□ 0.54
SCN4AP35499 AC090164.2-201ENST00000611487 516 ntBASIC18.42■□□□□ 0.54
SCN4AP35499 PCBP2-OT1-201ENST00000634357 590 ntBASIC18.42■□□□□ 0.54
SCN4AP35499 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN4AP35499 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN4AP35499 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SCN4AP35499 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SCN4AP35499 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SCN4AP35499 KRT8P4-201ENST00000509735 1454 ntBASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms