Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC108724.1-201ENST00000481669 352 ntBASIC16.22■□□□□ 0.19
COL6A3P12111 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.22■□□□□ 0.19
COL6A3P12111 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC16.22■□□□□ 0.19
COL6A3P12111 ZACNP1-201ENST00000612259 710 ntBASIC16.22■□□□□ 0.19
COL6A3P12111 NAP1L6-202ENST00000641404 1222 ntBASIC16.22■□□□□ 0.19
COL6A3P12111 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
COL6A3P12111 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
COL6A3P12111 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL6A3P12111 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC16.22■□□□□ 0.19
COL6A3P12111 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC16.22■□□□□ 0.19
COL6A3P12111 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.22■□□□□ 0.19
COL6A3P12111 PSME2-217ENST00000615264 874 ntTSL 5 BASIC16.22■□□□□ 0.19
COL6A3P12111 PSME2-218ENST00000630027 185 ntTSL 3 BASIC16.22■□□□□ 0.19
COL6A3P12111 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
COL6A3P12111 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC16.22■□□□□ 0.19
COL6A3P12111 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
COL6A3P12111 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.21■□□□□ 0.19
COL6A3P12111 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.21■□□□□ 0.19
COL6A3P12111 BCAS2P2-201ENST00000425064 674 ntBASIC16.21■□□□□ 0.19
COL6A3P12111 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC16.21■□□□□ 0.19
COL6A3P12111 AC005324.6-201ENST00000587972 613 ntBASIC16.21■□□□□ 0.19
COL6A3P12111 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.21■□□□□ 0.19
COL6A3P12111 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.21■□□□□ 0.19
COL6A3P12111 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.21■□□□□ 0.19
COL6A3P12111 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.21■□□□□ 0.19
COL6A3P12111 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 GHSR-202ENST00000427970 912 ntBASIC16.21■□□□□ 0.19
COL6A3P12111 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.21■□□□□ 0.19
COL6A3P12111 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC16.21■□□□□ 0.19
COL6A3P12111 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A3P12111 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC16.21■□□□□ 0.19
COL6A3P12111 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
COL6A3P12111 AC090164.2-201ENST00000611487 516 ntBASIC16.21■□□□□ 0.19
COL6A3P12111 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL6A3P12111 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.21■□□□□ 0.18
COL6A3P12111 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
COL6A3P12111 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.21■□□□□ 0.18
COL6A3P12111 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.18
COL6A3P12111 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL6A3P12111 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A3P12111 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A3P12111 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A3P12111 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
COL6A3P12111 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 FAM8A4P-201ENST00000435433 1213 ntBASIC16.2■□□□□ 0.18
COL6A3P12111 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A3P12111 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A3P12111 AL135901.1-201ENST00000451812 333 ntBASIC16.2■□□□□ 0.18
COL6A3P12111 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A3P12111 LINC00634-202ENST00000505157 222 ntBASIC16.2■□□□□ 0.18
COL6A3P12111 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A3P12111 AC073592.2-201ENST00000623062 780 ntBASIC16.2■□□□□ 0.18
COL6A3P12111 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 AC018695.7-201ENST00000624587 2492 ntBASIC16.2■□□□□ 0.18
COL6A3P12111 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A3P12111 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A3P12111 AC244197.1-201ENST00000456494 951 ntBASIC16.2■□□□□ 0.18
COL6A3P12111 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A3P12111 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
COL6A3P12111 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms