Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A1P02462 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
COL4A1P02462 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A1P02462 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A1P02462 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A1P02462 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A1P02462 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC19.16■□□□□ 0.66
COL4A1P02462 AC112504.1-201ENST00000623415 1841 ntBASIC19.16■□□□□ 0.66
COL4A1P02462 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A1P02462 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL4A1P02462 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
COL4A1P02462 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC19.16■□□□□ 0.66
COL4A1P02462 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL4A1P02462 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC19.16■□□□□ 0.66
COL4A1P02462 MIR4741-201ENST00000579822 90 ntBASIC19.16■□□□□ 0.66
COL4A1P02462 MIR3615-201ENST00000581999 87 ntBASIC19.16■□□□□ 0.66
COL4A1P02462 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.16■□□□□ 0.66
COL4A1P02462 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL4A1P02462 GPR39-203ENST00000622084 900 ntTSL 5 BASIC19.16■□□□□ 0.66
COL4A1P02462 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A1P02462 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL4A1P02462 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL4A1P02462 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL4A1P02462 MIR1202-201ENST00000408529 83 ntBASIC19.15■□□□□ 0.66
COL4A1P02462 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A1P02462 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL4A1P02462 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC19.15■□□□□ 0.66
COL4A1P02462 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
COL4A1P02462 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC19.15■□□□□ 0.66
COL4A1P02462 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL4A1P02462 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A1P02462 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A1P02462 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.14■□□□□ 0.66
COL4A1P02462 AC006001.1-201ENST00000325130 474 ntBASIC19.14■□□□□ 0.66
COL4A1P02462 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A1P02462 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
COL4A1P02462 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
COL4A1P02462 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
COL4A1P02462 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC19.14■□□□□ 0.66
COL4A1P02462 AGER-214ENST00000538695 487 ntTSL 2 BASIC19.14■□□□□ 0.66
COL4A1P02462 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.14■□□□□ 0.66
COL4A1P02462 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.14■□□□□ 0.66
COL4A1P02462 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A1P02462 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A1P02462 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A1P02462 AC006449.5-201ENST00000610658 2098 ntBASIC19.14■□□□□ 0.66
COL4A1P02462 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL4A1P02462 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL4A1P02462 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC19.14■□□□□ 0.65
COL4A1P02462 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A1P02462 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A1P02462 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A1P02462 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC19.14■□□□□ 0.65
COL4A1P02462 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A1P02462 FOS-202ENST00000535987 1402 ntTSL 2 BASIC19.14■□□□□ 0.65
COL4A1P02462 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A1P02462 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A1P02462 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
COL4A1P02462 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
COL4A1P02462 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A1P02462 GPAA1P2-201ENST00000417923 928 ntBASIC19.14■□□□□ 0.65
COL4A1P02462 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A1P02462 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A1P02462 AC006033.1-201ENST00000440505 426 ntBASIC19.14■□□□□ 0.65
COL4A1P02462 AC245100.3-201ENST00000441281 285 ntBASIC19.14■□□□□ 0.65
COL4A1P02462 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A1P02462 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A1P02462 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A1P02462 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC19.14■□□□□ 0.65
COL4A1P02462 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.14■□□□□ 0.65
COL4A1P02462 AC025181.2-201ENST00000606994 802 ntBASIC19.14■□□□□ 0.65
COL4A1P02462 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL4A1P02462 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
COL4A1P02462 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A1P02462 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A1P02462 AL603832.2-201ENST00000566195 2125 ntBASIC19.13■□□□□ 0.65
COL4A1P02462 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A1P02462 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A1P02462 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL4A1P02462 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A1P02462 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A1P02462 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL4A1P02462 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A1P02462 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A1P02462 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
COL4A1P02462 EIF3FP3-201ENST00000434851 1086 ntBASIC19.13■□□□□ 0.65
COL4A1P02462 CNN2P10-201ENST00000443067 918 ntBASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms