Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.21■□□□□ 0.19
HOXC11O43248 AL162726.2-201ENST00000438986 1017 ntBASIC16.21■□□□□ 0.19
HOXC11O43248 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.21■□□□□ 0.19
HOXC11O43248 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC11O43248 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC11O43248 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.21■□□□□ 0.19
HOXC11O43248 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC11O43248 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HOXC11O43248 AC008735.3-201ENST00000596646 500 ntBASIC16.21■□□□□ 0.19
HOXC11O43248 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.21■□□□□ 0.19
HOXC11O43248 AC133539.2-201ENST00000604757 467 ntBASIC16.21■□□□□ 0.19
HOXC11O43248 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.21■□□□□ 0.19
HOXC11O43248 RPSAP52-203ENST00000622976 1023 ntBASIC16.21■□□□□ 0.19
HOXC11O43248 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
HOXC11O43248 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC11O43248 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HOXC11O43248 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.21■□□□□ 0.18
HOXC11O43248 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HOXC11O43248 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXC11O43248 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC11O43248 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HOXC11O43248 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HOXC11O43248 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.2■□□□□ 0.18
HOXC11O43248 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXC11O43248 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.2■□□□□ 0.18
HOXC11O43248 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.2■□□□□ 0.18
HOXC11O43248 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.2■□□□□ 0.18
HOXC11O43248 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HOXC11O43248 AC010319.3-201ENST00000597028 470 ntBASIC16.2■□□□□ 0.18
HOXC11O43248 MIR6805-201ENST00000615055 62 ntBASIC16.2■□□□□ 0.18
HOXC11O43248 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HOXC11O43248 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC11O43248 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC11O43248 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC11O43248 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC11O43248 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HOXC11O43248 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC11O43248 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC11O43248 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC11O43248 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC11O43248 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
HOXC11O43248 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC11O43248 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.19■□□□□ 0.18
HOXC11O43248 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HOXC11O43248 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
HOXC11O43248 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.19■□□□□ 0.18
HOXC11O43248 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.19■□□□□ 0.18
HOXC11O43248 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.19■□□□□ 0.18
HOXC11O43248 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.19■□□□□ 0.18
HOXC11O43248 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.19■□□□□ 0.18
HOXC11O43248 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HOXC11O43248 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
HOXC11O43248 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.19■□□□□ 0.18
HOXC11O43248 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
HOXC11O43248 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.19■□□□□ 0.18
HOXC11O43248 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HOXC11O43248 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 KRT8P22-201ENST00000562317 1415 ntBASIC16.19■□□□□ 0.18
HOXC11O43248 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HOXC11O43248 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms