Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 REXO1L1P-202ENST00000608646 1974 ntBASIC16.19■□□□□ 0.18
AP3B1O00203 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 MIR574-201ENST00000385209 96 ntBASIC16.19■□□□□ 0.18
AP3B1O00203 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.19■□□□□ 0.18
AP3B1O00203 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.19■□□□□ 0.18
AP3B1O00203 TIMM8BP1-201ENST00000452384 211 ntBASIC16.19■□□□□ 0.18
AP3B1O00203 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.19■□□□□ 0.18
AP3B1O00203 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.19■□□□□ 0.18
AP3B1O00203 PGAM5P1-201ENST00000518923 814 ntBASIC16.19■□□□□ 0.18
AP3B1O00203 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.19■□□□□ 0.18
AP3B1O00203 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.19■□□□□ 0.18
AP3B1O00203 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.19■□□□□ 0.18
AP3B1O00203 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.19■□□□□ 0.18
AP3B1O00203 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.19■□□□□ 0.18
AP3B1O00203 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.19■□□□□ 0.18
AP3B1O00203 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.19■□□□□ 0.18
AP3B1O00203 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
AP3B1O00203 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.19■□□□□ 0.18
AP3B1O00203 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.19■□□□□ 0.18
AP3B1O00203 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
AP3B1O00203 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.18■□□□□ 0.18
AP3B1O00203 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.18■□□□□ 0.18
AP3B1O00203 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.18■□□□□ 0.18
AP3B1O00203 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.18■□□□□ 0.18
AP3B1O00203 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.18■□□□□ 0.18
AP3B1O00203 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
AP3B1O00203 MIR940-201ENST00000401276 94 ntBASIC16.18■□□□□ 0.18
AP3B1O00203 HTR5BP-201ENST00000430851 1154 ntBASIC16.18■□□□□ 0.18
AP3B1O00203 AL592309.1-201ENST00000443127 649 ntBASIC16.18■□□□□ 0.18
AP3B1O00203 DNAJB3-201ENST00000446806 729 ntBASIC16.18■□□□□ 0.18
AP3B1O00203 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.18■□□□□ 0.18
AP3B1O00203 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.18■□□□□ 0.18
AP3B1O00203 KRT8P48-201ENST00000515599 1220 ntBASIC16.18■□□□□ 0.18
AP3B1O00203 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.18■□□□□ 0.18
AP3B1O00203 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.18■□□□□ 0.18
AP3B1O00203 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.18■□□□□ 0.18
AP3B1O00203 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.18■□□□□ 0.18
AP3B1O00203 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
AP3B1O00203 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.18■□□□□ 0.18
AP3B1O00203 AC087481.3-201ENST00000602886 1894 ntBASIC16.18■□□□□ 0.18
AP3B1O00203 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.18■□□□□ 0.18
AP3B1O00203 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
AP3B1O00203 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
AP3B1O00203 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.17■□□□□ 0.18
AP3B1O00203 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
AP3B1O00203 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
AP3B1O00203 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
AP3B1O00203 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
AP3B1O00203 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.17■□□□□ 0.18
AP3B1O00203 EEF1DP4-201ENST00000446006 880 ntBASIC16.17■□□□□ 0.18
AP3B1O00203 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.17■□□□□ 0.18
AP3B1O00203 AL450472.2-201ENST00000603663 1156 ntBASIC16.17■□□□□ 0.18
AP3B1O00203 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 UXT-AS1-201ENST00000590504 1525 ntBASIC16.17■□□□□ 0.18
AP3B1O00203 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.17■□□□□ 0.18
AP3B1O00203 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms