Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 AC055876.3-201ENST00000431496 288 ntBASIC17.03■□□□□ 0.32
CISHQ9NSE2 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 MIR4313-201ENST00000580760 101 ntBASIC17.03■□□□□ 0.32
CISHQ9NSE2 AC138649.4-201ENST00000612222 287 ntBASIC17.03■□□□□ 0.32
CISHQ9NSE2 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.32
CISHQ9NSE2 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CISHQ9NSE2 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CISHQ9NSE2 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CISHQ9NSE2 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CISHQ9NSE2 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
CISHQ9NSE2 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CISHQ9NSE2 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CISHQ9NSE2 SERBP1P3-201ENST00000459980 809 ntBASIC17.02■□□□□ 0.32
CISHQ9NSE2 CYMP-203ENST00000474680 1263 ntBASIC17.02■□□□□ 0.32
CISHQ9NSE2 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 IGHV3-42-201ENST00000520410 361 ntBASIC17.02■□□□□ 0.32
CISHQ9NSE2 HNRNPUP1-201ENST00000554987 333 ntBASIC17.02■□□□□ 0.32
CISHQ9NSE2 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 AL390955.2-201ENST00000603032 514 ntBASIC17.02■□□□□ 0.32
CISHQ9NSE2 AL033527.5-202ENST00000641632 1098 ntBASIC17.02■□□□□ 0.32
CISHQ9NSE2 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.02■□□□□ 0.32
CISHQ9NSE2 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CISHQ9NSE2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.02■□□□□ 0.31
CISHQ9NSE2 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.31
CISHQ9NSE2 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 AC100757.3-201ENST00000622361 1406 ntBASIC17.02■□□□□ 0.31
CISHQ9NSE2 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
CISHQ9NSE2 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
CISHQ9NSE2 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CISHQ9NSE2 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
CISHQ9NSE2 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.02■□□□□ 0.31
CISHQ9NSE2 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms