Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 C18orf15-201ENST00000623680 2534 ntBASIC17.12■□□□□ 0.33
SIX2Q9NPC8 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 AC023141.5-201ENST00000458585 616 ntBASIC17.12■□□□□ 0.33
SIX2Q9NPC8 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.12■□□□□ 0.33
SIX2Q9NPC8 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SIX2Q9NPC8 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 AC211486.1-202ENST00000416371 468 ntBASIC17.11■□□□□ 0.33
SIX2Q9NPC8 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 AC211476.1-201ENST00000503899 468 ntBASIC17.11■□□□□ 0.33
SIX2Q9NPC8 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 AC027612.4-201ENST00000605371 583 ntBASIC17.11■□□□□ 0.33
SIX2Q9NPC8 RN7SL828P-201ENST00000607615 303 ntBASIC17.11■□□□□ 0.33
SIX2Q9NPC8 AC003101.2-201ENST00000612557 442 ntBASIC17.11■□□□□ 0.33
SIX2Q9NPC8 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SIX2Q9NPC8 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX2Q9NPC8 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms