Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.24□□□□□ -0.13
MMP28Q9H239 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 ST20-AS1-201ENST00000560255 4223 ntBASIC14.24□□□□□ -0.13
MMP28Q9H239 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
MMP28Q9H239 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC14.24□□□□□ -0.13
MMP28Q9H239 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
MMP28Q9H239 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 AC009078.2-202ENST00000463353 338 ntBASIC14.24□□□□□ -0.13
MMP28Q9H239 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 KRT18P31-201ENST00000506277 1292 ntBASIC14.24□□□□□ -0.13
MMP28Q9H239 DUX4L17-201ENST00000557360 1267 ntBASIC14.24□□□□□ -0.13
MMP28Q9H239 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 IGHV3OR16-7-201ENST00000604106 360 ntBASIC14.24□□□□□ -0.13
MMP28Q9H239 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
MMP28Q9H239 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.24□□□□□ -0.13
MMP28Q9H239 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
MMP28Q9H239 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.24□□□□□ -0.13
MMP28Q9H239 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MMP28Q9H239 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
MMP28Q9H239 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.23□□□□□ -0.13
MMP28Q9H239 AC010327.5-201ENST00000586923 3061 ntBASIC14.23□□□□□ -0.13
MMP28Q9H239 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MMP28Q9H239 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC14.23□□□□□ -0.13
MMP28Q9H239 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
MMP28Q9H239 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
MMP28Q9H239 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 AC087481.3-201ENST00000602886 1894 ntBASIC14.23□□□□□ -0.13
MMP28Q9H239 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
MMP28Q9H239 PMPCAP1-201ENST00000508114 1576 ntBASIC14.23□□□□□ -0.13
MMP28Q9H239 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.23□□□□□ -0.13
MMP28Q9H239 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.23□□□□□ -0.13
MMP28Q9H239 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 ABCD1P5-201ENST00000445663 754 ntBASIC14.23□□□□□ -0.13
MMP28Q9H239 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MMP28Q9H239 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC14.23□□□□□ -0.13
MMP28Q9H239 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.23□□□□□ -0.13
MMP28Q9H239 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.23□□□□□ -0.13
MMP28Q9H239 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
MMP28Q9H239 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.23□□□□□ -0.13
MMP28Q9H239 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
MMP28Q9H239 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
MMP28Q9H239 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.23□□□□□ -0.13
MMP28Q9H239 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MMP28Q9H239 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms