Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 AC239868.1-201ENST00000369385 493 ntBASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 SLC25A1P3-201ENST00000395415 828 ntBASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 AC142086.5-202ENST00000562500 217 ntBASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 AL450487.2-201ENST00000615934 407 ntBASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC15.79■□□□□ 0.12
COL25A1Q9BXS0 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 U82695.1-201ENST00000635752 1889 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 MIR566-201ENST00000385187 94 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 OLA1P2-201ENST00000395519 1264 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 GHSR-202ENST00000427970 912 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 AC114812.1-204ENST00000449669 728 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 CISD2-202ENST00000503643 808 ntTSL 2 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 MIR3180-2-201ENST00000581748 88 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 AC004466.2-201ENST00000614749 516 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 AC011462.4-201ENST00000616866 449 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 AC011471.3-201ENST00000623576 402 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 AL162426.1-201ENST00000624141 743 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.78■□□□□ 0.12
COL25A1Q9BXS0 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 CASP2-203ENST00000392925 616 ntTSL 3 BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 AC009779.1-201ENST00000551138 283 ntBASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 NIFKP4-201ENST00000567275 1192 ntBASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.77■□□□□ 0.12
COL25A1Q9BXS0 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL25A1Q9BXS0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL25A1Q9BXS0 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL25A1Q9BXS0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms