Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC073413.1-201ENST00000603927 732 ntBASIC15.52■□□□□ 0.07
VPS13AQ96RL7 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
VPS13AQ96RL7 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 RN7SL48P-201ENST00000579283 293 ntBASIC15.51■□□□□ 0.07
VPS13AQ96RL7 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 PRSS30P-206ENST00000641773 873 ntBASIC15.51■□□□□ 0.07
VPS13AQ96RL7 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 AL121723.1-201ENST00000445194 1519 ntBASIC15.51■□□□□ 0.07
VPS13AQ96RL7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 RNA5SP486-201ENST00000515961 83 ntBASIC15.51■□□□□ 0.07
VPS13AQ96RL7 IGLV3-15-201ENST00000518356 244 ntBASIC15.51■□□□□ 0.07
VPS13AQ96RL7 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.51■□□□□ 0.07
VPS13AQ96RL7 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS13AQ96RL7 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 TUBB8P12-201ENST00000308911 1335 ntBASIC15.5■□□□□ 0.07
VPS13AQ96RL7 TUBB7P-202ENST00000428444 1305 ntBASIC15.5■□□□□ 0.07
VPS13AQ96RL7 TUBB8P7-204ENST00000567960 1332 ntBASIC15.5■□□□□ 0.07
VPS13AQ96RL7 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 AC000095.1-201ENST00000603208 874 ntBASIC15.5■□□□□ 0.07
VPS13AQ96RL7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 AC100757.4-201ENST00000626934 759 ntBASIC15.5■□□□□ 0.07
VPS13AQ96RL7 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS13AQ96RL7 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 Z97180.1-201ENST00000445173 988 ntBASIC15.49■□□□□ 0.07
VPS13AQ96RL7 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.49■□□□□ 0.07
VPS13AQ96RL7 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 AP001094.4-201ENST00000579008 2176 ntBASIC15.49■□□□□ 0.07
VPS13AQ96RL7 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms