Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC42Q96M95 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
CCDC42Q96M95 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 PMS2P7-201ENST00000506558 1336 ntBASIC17.32■□□□□ 0.36
CCDC42Q96M95 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 RHOQP3-201ENST00000437982 621 ntBASIC17.32■□□□□ 0.36
CCDC42Q96M95 AC009947.1-201ENST00000444350 727 ntBASIC17.32■□□□□ 0.36
CCDC42Q96M95 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 KRT18P56-201ENST00000507275 550 ntBASIC17.32■□□□□ 0.36
CCDC42Q96M95 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 AC023141.13-201ENST00000604991 943 ntBASIC17.32■□□□□ 0.36
CCDC42Q96M95 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 AC010507.1-201ENST00000633895 436 ntBASIC17.32■□□□□ 0.36
CCDC42Q96M95 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CCDC42Q96M95 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC42Q96M95 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 AL049840.3-201ENST00000602669 611 ntBASIC17.31■□□□□ 0.36
CCDC42Q96M95 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 AL773604.1-201ENST00000617417 272 ntBASIC17.31■□□□□ 0.36
CCDC42Q96M95 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 PCDHA3-202ENST00000532566 4594 ntBASIC17.31■□□□□ 0.36
CCDC42Q96M95 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC42Q96M95 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC42Q96M95 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms