Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 FAM8A3P-201ENST00000427218 844 ntBASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.14■□□□□ 0.65
CHMP4CQ96CF2 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 AC067930.6-201ENST00000623257 4947 ntBASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 AC024909.3-201ENST00000611513 2257 ntBASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 SPDYE7P-202ENST00000420373 878 ntBASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 AC067863.1-201ENST00000494933 530 ntBASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 AC097493.3-201ENST00000509725 367 ntBASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 CDC14C-201ENST00000428251 1719 ntBASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 AP003680.1-201ENST00000598970 3660 ntBASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHMP4CQ96CF2 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 LINC02447-202ENST00000501888 2146 ntBASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 AC069224.1-201ENST00000566372 1715 ntBASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 AC092364.2-202ENST00000597012 1073 ntBASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHMP4CQ96CF2 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms