Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 RNA5SP416-201ENST00000516838 111 ntBASIC14.43□□□□□ -0.1
PTP4A1Q93096 SLC25A1P1-201ENST00000528351 927 ntBASIC14.43□□□□□ -0.1
PTP4A1Q93096 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 FAM197Y3-203ENST00000618346 717 ntBASIC14.43□□□□□ -0.1
PTP4A1Q93096 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 CICP14-201ENST00000629111 2732 ntBASIC14.43□□□□□ -0.1
PTP4A1Q93096 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.43□□□□□ -0.1
PTP4A1Q93096 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
PTP4A1Q93096 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PTP4A1Q93096 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 AC007967.2-201ENST00000432613 625 ntBASIC14.42□□□□□ -0.1
PTP4A1Q93096 KRT18P3-201ENST00000451602 1288 ntBASIC14.42□□□□□ -0.1
PTP4A1Q93096 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTP4A1Q93096 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.42□□□□□ -0.1
PTP4A1Q93096 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTP4A1Q93096 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTP4A1Q93096 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTP4A1Q93096 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PTP4A1Q93096 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PTP4A1Q93096 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PTP4A1Q93096 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.41□□□□□ -0.1
PTP4A1Q93096 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTP4A1Q93096 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
PTP4A1Q93096 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTP4A1Q93096 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms