Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC068587.3-201ENST00000526613 355 ntBASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 FAM8A2P-201ENST00000528813 1142 ntBASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 ENPP7P5-201ENST00000541031 1031 ntBASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
NPAS3Q8IXF0 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 AC005229.1-201ENST00000392885 409 ntBASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 MIR1908-201ENST00000410394 80 ntBASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 SOCS2P1-201ENST00000417727 557 ntBASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 AP001889.1-201ENST00000525414 633 ntBASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 PTP4A1P2-201ENST00000546033 454 ntBASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.47■□□□□ 0.23
NPAS3Q8IXF0 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 RPL13AP25-201ENST00000484130 612 ntBASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 AC120045.2-201ENST00000567334 178 ntBASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 AL049840.4-201ENST00000602422 811 ntBASIC16.46■□□□□ 0.23
NPAS3Q8IXF0 AL606495.2-201ENST00000605867 535 ntBASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms