Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS53Q5VIR6 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 AC134407.2-201ENST00000625089 1978 ntBASIC19.33■□□□□ 0.69
VPS53Q5VIR6 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VPS53Q5VIR6 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 SPDYE7P-202ENST00000420373 878 ntBASIC19.33■□□□□ 0.68
VPS53Q5VIR6 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 DUX4L27-201ENST00000554796 1261 ntBASIC19.33■□□□□ 0.68
VPS53Q5VIR6 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 AC015911.4-201ENST00000588022 1070 ntBASIC19.33■□□□□ 0.68
VPS53Q5VIR6 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS53Q5VIR6 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.32■□□□□ 0.68
VPS53Q5VIR6 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 AL645939.2-201ENST00000427340 991 ntBASIC19.32■□□□□ 0.68
VPS53Q5VIR6 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 RFPL4AP1-201ENST00000530883 850 ntBASIC19.32■□□□□ 0.68
VPS53Q5VIR6 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS53Q5VIR6 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 AL353705.2-201ENST00000428243 662 ntBASIC19.31■□□□□ 0.68
VPS53Q5VIR6 CNN2P2-201ENST00000443536 909 ntBASIC19.31■□□□□ 0.68
VPS53Q5VIR6 CNN2P3-201ENST00000450201 906 ntBASIC19.31■□□□□ 0.68
VPS53Q5VIR6 AC245100.5-201ENST00000452108 331 ntBASIC19.31■□□□□ 0.68
VPS53Q5VIR6 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 SATB1-217ENST00000493952 626 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 RN7SL828P-201ENST00000607615 303 ntBASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms