Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
ABCA4P78363 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
ABCA4P78363 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.76□□□□□ -0.21
ABCA4P78363 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
ABCA4P78363 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.76□□□□□ -0.21
ABCA4P78363 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA4P78363 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC13.76□□□□□ -0.21
ABCA4P78363 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.76□□□□□ -0.21
ABCA4P78363 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.76□□□□□ -0.21
ABCA4P78363 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.76□□□□□ -0.21
ABCA4P78363 AC104596.2-201ENST00000512793 793 ntBASIC13.76□□□□□ -0.21
ABCA4P78363 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.76□□□□□ -0.21
ABCA4P78363 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
ABCA4P78363 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.76□□□□□ -0.21
ABCA4P78363 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.76□□□□□ -0.21
ABCA4P78363 IGHV3OR16-16-201ENST00000563644 343 ntBASIC13.76□□□□□ -0.21
ABCA4P78363 RN7SL219P-201ENST00000582872 296 ntBASIC13.76□□□□□ -0.21
ABCA4P78363 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 AC074044.1-201ENST00000609673 707 ntBASIC13.76□□□□□ -0.21
ABCA4P78363 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.76□□□□□ -0.21
ABCA4P78363 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
ABCA4P78363 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC13.76□□□□□ -0.21
ABCA4P78363 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.76□□□□□ -0.21
ABCA4P78363 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA4P78363 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 CTBP2P5-201ENST00000454986 1264 ntBASIC13.75□□□□□ -0.21
ABCA4P78363 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.75□□□□□ -0.21
ABCA4P78363 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.75□□□□□ -0.21
ABCA4P78363 AL022328.1-201ENST00000610050 478 ntBASIC13.75□□□□□ -0.21
ABCA4P78363 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
ABCA4P78363 CU634019.7-201ENST00000624153 1185 ntBASIC13.75□□□□□ -0.21
ABCA4P78363 FP236241.2-201ENST00000624906 1185 ntBASIC13.75□□□□□ -0.21
ABCA4P78363 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
ABCA4P78363 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
ABCA4P78363 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
ABCA4P78363 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
ABCA4P78363 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.75□□□□□ -0.21
ABCA4P78363 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
ABCA4P78363 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 FO393414.2-201ENST00000405153 598 ntBASIC13.75□□□□□ -0.21
ABCA4P78363 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.75□□□□□ -0.21
ABCA4P78363 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.75□□□□□ -0.21
ABCA4P78363 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.75□□□□□ -0.21
ABCA4P78363 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.75□□□□□ -0.21
ABCA4P78363 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA4P78363 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
ABCA4P78363 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA4P78363 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms