Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
HMGCS2P54868 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC18.33■□□□□ 0.52
HMGCS2P54868 AP001063.1-201ENST00000568332 529 ntBASIC18.33■□□□□ 0.52
HMGCS2P54868 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.33■□□□□ 0.52
HMGCS2P54868 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.33■□□□□ 0.52
HMGCS2P54868 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGCS2P54868 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
HMGCS2P54868 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
HMGCS2P54868 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGCS2P54868 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGCS2P54868 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGCS2P54868 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HMGCS2P54868 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 AC018892.3-201ENST00000623986 2499 ntBASIC18.32■□□□□ 0.52
HMGCS2P54868 OR6D1P-203ENST00000641209 4860 ntBASIC18.32■□□□□ 0.52
HMGCS2P54868 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGCS2P54868 KRT8P44-201ENST00000441609 1350 ntBASIC18.32■□□□□ 0.52
HMGCS2P54868 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGCS2P54868 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
HMGCS2P54868 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGCS2P54868 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
HMGCS2P54868 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.32■□□□□ 0.52
HMGCS2P54868 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGCS2P54868 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 AC000095.1-201ENST00000603208 874 ntBASIC18.32■□□□□ 0.52
HMGCS2P54868 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 AL133338.1-201ENST00000565695 1517 ntBASIC18.32■□□□□ 0.52
HMGCS2P54868 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGCS2P54868 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.32■□□□□ 0.52
HMGCS2P54868 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGCS2P54868 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
HMGCS2P54868 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 AC011676.5-201ENST00000624864 2660 ntBASIC18.31■□□□□ 0.52
HMGCS2P54868 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGCS2P54868 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HMGCS2P54868 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 AC016694.1-201ENST00000434179 700 ntBASIC18.31■□□□□ 0.52
HMGCS2P54868 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGCS2P54868 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
HMGCS2P54868 KRT18P43-201ENST00000469825 1281 ntBASIC18.31■□□□□ 0.52
HMGCS2P54868 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
HMGCS2P54868 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGCS2P54868 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGCS2P54868 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGCS2P54868 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGCS2P54868 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGCS2P54868 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGCS2P54868 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC18.31■□□□□ 0.52
HMGCS2P54868 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HMGCS2P54868 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HMGCS2P54868 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGCS2P54868 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGCS2P54868 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HMGCS2P54868 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGCS2P54868 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HMGCS2P54868 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
HMGCS2P54868 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGCS2P54868 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HMGCS2P54868 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HMGCS2P54868 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms