Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PTPN9P43378 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PTPN9P43378 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN9P43378 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PTPN9P43378 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN9P43378 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN9P43378 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 AC107890.1-201ENST00000422478 521 ntBASIC16.6■□□□□ 0.25
PTPN9P43378 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN9P43378 FAM86GP-201ENST00000448322 971 ntBASIC16.6■□□□□ 0.25
PTPN9P43378 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 SERBP1P3-201ENST00000459980 809 ntBASIC16.6■□□□□ 0.25
PTPN9P43378 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN9P43378 AC069120.2-201ENST00000524091 540 ntBASIC16.6■□□□□ 0.25
PTPN9P43378 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN9P43378 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN9P43378 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN9P43378 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
PTPN9P43378 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
PTPN9P43378 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN9P43378 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN9P43378 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN9P43378 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
PTPN9P43378 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PTPN9P43378 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN9P43378 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.6■□□□□ 0.25
PTPN9P43378 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PTPN9P43378 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
PTPN9P43378 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PTPN9P43378 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.59■□□□□ 0.25
PTPN9P43378 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.59■□□□□ 0.25
PTPN9P43378 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.59■□□□□ 0.25
PTPN9P43378 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PTPN9P43378 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PTPN9P43378 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.59■□□□□ 0.25
PTPN9P43378 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.59■□□□□ 0.25
PTPN9P43378 AL158211.3-201ENST00000607385 239 ntBASIC16.59■□□□□ 0.25
PTPN9P43378 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.59■□□□□ 0.25
PTPN9P43378 TEX28P1-201ENST00000613479 1221 ntBASIC16.59■□□□□ 0.25
PTPN9P43378 AL138828.2-201ENST00000615812 383 ntBASIC16.59■□□□□ 0.25
PTPN9P43378 TEX28P2-201ENST00000617764 1221 ntBASIC16.59■□□□□ 0.25
PTPN9P43378 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 AC073592.8-201ENST00000624126 511 ntBASIC16.59■□□□□ 0.25
PTPN9P43378 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.59■□□□□ 0.25
PTPN9P43378 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PTPN9P43378 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PTPN9P43378 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN9P43378 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTPN9P43378 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.58■□□□□ 0.25
PTPN9P43378 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
PTPN9P43378 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.25
PTPN9P43378 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTPN9P43378 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.58■□□□□ 0.25
PTPN9P43378 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.58■□□□□ 0.25
PTPN9P43378 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTPN9P43378 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.58■□□□□ 0.25
PTPN9P43378 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PTPN9P43378 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PTPN9P43378 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
PTPN9P43378 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.58■□□□□ 0.24
PTPN9P43378 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.58■□□□□ 0.24
PTPN9P43378 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.58■□□□□ 0.24
PTPN9P43378 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.58■□□□□ 0.24
PTPN9P43378 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.58■□□□□ 0.24
PTPN9P43378 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms