Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
BRCA1P38398 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.97■□□□□ 0.63
BRCA1P38398 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 IGHV3-37-201ENST00000518544 340 ntBASIC18.97■□□□□ 0.63
BRCA1P38398 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRCA1P38398 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRCA1P38398 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRCA1P38398 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRCA1P38398 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BRCA1P38398 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.96■□□□□ 0.63
BRCA1P38398 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
BRCA1P38398 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRCA1P38398 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRCA1P38398 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRCA1P38398 AC026316.1-201ENST00000398900 414 ntBASIC18.96■□□□□ 0.63
BRCA1P38398 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
BRCA1P38398 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC18.96■□□□□ 0.63
BRCA1P38398 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BRCA1P38398 AC114812.1-204ENST00000449669 728 ntBASIC18.96■□□□□ 0.63
BRCA1P38398 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC18.96■□□□□ 0.63
BRCA1P38398 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.96■□□□□ 0.63
BRCA1P38398 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC18.96■□□□□ 0.63
BRCA1P38398 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC18.96■□□□□ 0.63
BRCA1P38398 IGLV3-15-201ENST00000518356 244 ntBASIC18.96■□□□□ 0.63
BRCA1P38398 IRF3-215ENST00000596822 823 ntTSL 3 BASIC18.96■□□□□ 0.63
BRCA1P38398 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC18.96■□□□□ 0.63
BRCA1P38398 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
BRCA1P38398 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.96■□□□□ 0.63
BRCA1P38398 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
BRCA1P38398 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
BRCA1P38398 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BRCA1P38398 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
BRCA1P38398 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
BRCA1P38398 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BRCA1P38398 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BRCA1P38398 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
BRCA1P38398 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
BRCA1P38398 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.95■□□□□ 0.62
BRCA1P38398 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC18.95■□□□□ 0.62
BRCA1P38398 AC005324.6-201ENST00000587972 613 ntBASIC18.95■□□□□ 0.62
BRCA1P38398 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
BRCA1P38398 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
BRCA1P38398 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC18.95■□□□□ 0.62
BRCA1P38398 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
BRCA1P38398 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC18.95■□□□□ 0.62
BRCA1P38398 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BRCA1P38398 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
BRCA1P38398 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.94■□□□□ 0.62
BRCA1P38398 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC18.94■□□□□ 0.62
BRCA1P38398 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.94■□□□□ 0.62
BRCA1P38398 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.94■□□□□ 0.62
BRCA1P38398 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.94■□□□□ 0.62
BRCA1P38398 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC18.94■□□□□ 0.62
BRCA1P38398 AC138894.2-201ENST00000602838 371 ntBASIC18.94■□□□□ 0.62
BRCA1P38398 AC090164.2-201ENST00000611487 516 ntBASIC18.94■□□□□ 0.62
BRCA1P38398 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.94■□□□□ 0.62
BRCA1P38398 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
BRCA1P38398 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
BRCA1P38398 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.94■□□□□ 0.62
BRCA1P38398 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
BRCA1P38398 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.94■□□□□ 0.62
BRCA1P38398 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
BRCA1P38398 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 NOC2LP2-201ENST00000407594 1944 ntBASIC18.94■□□□□ 0.62
BRCA1P38398 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
BRCA1P38398 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.94■□□□□ 0.62
BRCA1P38398 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC18.94■□□□□ 0.62
BRCA1P38398 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.94■□□□□ 0.62
BRCA1P38398 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.94■□□□□ 0.62
BRCA1P38398 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.94■□□□□ 0.62
BRCA1P38398 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
BRCA1P38398 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.94■□□□□ 0.62
BRCA1P38398 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BRCA1P38398 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
BRCA1P38398 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC18.93■□□□□ 0.62
BRCA1P38398 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC18.93■□□□□ 0.62
BRCA1P38398 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms