Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HOXD3P31249 BANF1P1-201ENST00000553684 263 ntBASIC12.41□□□□□ -0.42
HOXD3P31249 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.41□□□□□ -0.42
HOXD3P31249 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC12.41□□□□□ -0.42
HOXD3P31249 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC12.41□□□□□ -0.42
HOXD3P31249 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.41□□□□□ -0.42
HOXD3P31249 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
HOXD3P31249 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
HOXD3P31249 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 CALY-202ENST00000368555 783 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
HOXD3P31249 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 RPL37AP1-201ENST00000412502 279 ntBASIC12.4□□□□□ -0.42
HOXD3P31249 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXD3P31249 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXD3P31249 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC12.4□□□□□ -0.42
HOXD3P31249 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXD3P31249 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
HOXD3P31249 RAB34-223ENST00000636154 730 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC12.4□□□□□ -0.42
HOXD3P31249 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXD3P31249 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXD3P31249 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
HOXD3P31249 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC12.4□□□□□ -0.43
HOXD3P31249 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
HOXD3P31249 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.4□□□□□ -0.43
HOXD3P31249 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.4□□□□□ -0.43
HOXD3P31249 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
HOXD3P31249 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXD3P31249 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
HOXD3P31249 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXD3P31249 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXD3P31249 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
HOXD3P31249 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 AC124067.4-201ENST00000519691 2379 ntBASIC12.39□□□□□ -0.43
HOXD3P31249 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HOXD3P31249 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms