Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
MSX1P28360 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.69□□□□□ -0.06
MSX1P28360 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.69□□□□□ -0.06
MSX1P28360 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
MSX1P28360 MTATP6P19-201ENST00000413797 659 ntBASIC14.69□□□□□ -0.06
MSX1P28360 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.69□□□□□ -0.06
MSX1P28360 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.69□□□□□ -0.06
MSX1P28360 AC092580.3-201ENST00000430932 139 ntBASIC14.69□□□□□ -0.06
MSX1P28360 CRB3P1-201ENST00000449338 276 ntBASIC14.69□□□□□ -0.06
MSX1P28360 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 MIR4453-201ENST00000584019 89 ntBASIC14.69□□□□□ -0.06
MSX1P28360 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
MSX1P28360 AC027307.3-201ENST00000594262 1100 ntBASIC14.69□□□□□ -0.06
MSX1P28360 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.69□□□□□ -0.06
MSX1P28360 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
MSX1P28360 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
MSX1P28360 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
MSX1P28360 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
MSX1P28360 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX1P28360 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 AC079328.2-201ENST00000561241 3354 ntBASIC14.68□□□□□ -0.06
MSX1P28360 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
MSX1P28360 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.68□□□□□ -0.06
MSX1P28360 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
MSX1P28360 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.68□□□□□ -0.06
MSX1P28360 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.68□□□□□ -0.06
MSX1P28360 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC14.68□□□□□ -0.06
MSX1P28360 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 AC241585.1-201ENST00000433527 519 ntBASIC14.68□□□□□ -0.06
MSX1P28360 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.68□□□□□ -0.06
MSX1P28360 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.68□□□□□ -0.06
MSX1P28360 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.68□□□□□ -0.06
MSX1P28360 AL358472.5-202ENST00000641448 1267 ntBASIC14.68□□□□□ -0.06
MSX1P28360 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
MSX1P28360 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MSX1P28360 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
MSX1P28360 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.68□□□□□ -0.06
MSX1P28360 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.68□□□□□ -0.06
MSX1P28360 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 AC026691.1-201ENST00000602502 2017 ntBASIC14.68□□□□□ -0.06
MSX1P28360 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MSX1P28360 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.68□□□□□ -0.06
MSX1P28360 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
MSX1P28360 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX1P28360 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
MSX1P28360 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX1P28360 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX1P28360 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX1P28360 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX1P28360 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
MSX1P28360 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX1P28360 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX1P28360 AC011477.6-201ENST00000604980 1927 ntBASIC14.67□□□□□ -0.06
MSX1P28360 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX1P28360 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MSX1P28360 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX1P28360 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX1P28360 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX1P28360 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MSX1P28360 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX1P28360 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.67□□□□□ -0.06
MSX1P28360 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX1P28360 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX1P28360 AC004890.2-204ENST00000481968 304 ntBASIC14.67□□□□□ -0.06
MSX1P28360 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.67□□□□□ -0.06
MSX1P28360 AP005018.1-201ENST00000525475 301 ntBASIC14.67□□□□□ -0.06
MSX1P28360 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.67□□□□□ -0.06
MSX1P28360 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms