Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SDC1P18827 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SDC1P18827 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SDC1P18827 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.27■□□□□ 0.03
SDC1P18827 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SDC1P18827 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.27■□□□□ 0.03
SDC1P18827 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SDC1P18827 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.26■□□□□ 0.03
SDC1P18827 AC006486.2-201ENST00000624246 2199 ntBASIC15.26■□□□□ 0.03
SDC1P18827 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SDC1P18827 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.26■□□□□ 0.03
SDC1P18827 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.26■□□□□ 0.03
SDC1P18827 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 AL109954.1-202ENST00000564051 2148 ntBASIC15.26■□□□□ 0.03
SDC1P18827 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SDC1P18827 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SDC1P18827 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.26■□□□□ 0.03
SDC1P18827 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.26■□□□□ 0.03
SDC1P18827 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 AC009090.5-201ENST00000624886 2285 ntBASIC15.26■□□□□ 0.03
SDC1P18827 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 MIR346-201ENST00000362234 95 ntBASIC15.26■□□□□ 0.03
SDC1P18827 SPDYE11-202ENST00000450699 704 ntBASIC15.26■□□□□ 0.03
SDC1P18827 AC079140.1-201ENST00000508039 487 ntBASIC15.26■□□□□ 0.03
SDC1P18827 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.26■□□□□ 0.03
SDC1P18827 LINC01225-203ENST00000563550 1244 ntBASIC15.26■□□□□ 0.03
SDC1P18827 AC040169.1-201ENST00000565382 521 ntBASIC15.26■□□□□ 0.03
SDC1P18827 SPDYE9P-201ENST00000570642 692 ntBASIC15.26■□□□□ 0.03
SDC1P18827 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.26■□□□□ 0.03
SDC1P18827 AC026120.1-201ENST00000611536 926 ntBASIC15.26■□□□□ 0.03
SDC1P18827 SPDYE10P-202ENST00000612005 668 ntBASIC15.26■□□□□ 0.03
SDC1P18827 SPDYE8P-202ENST00000612377 668 ntBASIC15.26■□□□□ 0.03
SDC1P18827 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
SDC1P18827 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDC1P18827 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.25■□□□□ 0.03
SDC1P18827 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.25■□□□□ 0.03
SDC1P18827 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
SDC1P18827 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.25■□□□□ 0.03
SDC1P18827 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
SDC1P18827 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.25■□□□□ 0.03
SDC1P18827 AC004987.2-201ENST00000395959 1148 ntBASIC15.25■□□□□ 0.03
SDC1P18827 MIR940-201ENST00000401276 94 ntBASIC15.25■□□□□ 0.03
SDC1P18827 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 AC026396.1-201ENST00000419388 421 ntBASIC15.25■□□□□ 0.03
SDC1P18827 MCCD1P2-201ENST00000423228 335 ntBASIC15.25■□□□□ 0.03
SDC1P18827 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.25■□□□□ 0.03
SDC1P18827 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.25■□□□□ 0.03
SDC1P18827 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.25■□□□□ 0.03
SDC1P18827 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.25■□□□□ 0.03
SDC1P18827 MIR4313-201ENST00000580760 101 ntBASIC15.25■□□□□ 0.03
SDC1P18827 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.25■□□□□ 0.03
SDC1P18827 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.25■□□□□ 0.03
SDC1P18827 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.25■□□□□ 0.03
SDC1P18827 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.25■□□□□ 0.03
SDC1P18827 AC138035.3-201ENST00000622706 2791 ntBASIC15.25■□□□□ 0.03
SDC1P18827 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
SDC1P18827 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SDC1P18827 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.25■□□□□ 0.03
SDC1P18827 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SDC1P18827 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.24■□□□□ 0.03
SDC1P18827 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SDC1P18827 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.24■□□□□ 0.03
SDC1P18827 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SDC1P18827 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SDC1P18827 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SDC1P18827 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.24■□□□□ 0.03
SDC1P18827 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SDC1P18827 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.24■□□□□ 0.03
SDC1P18827 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.24■□□□□ 0.03
SDC1P18827 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms