Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC022210.1-201ENST00000449856 793 ntBASIC16.46■□□□□ 0.23
HMGA1P17096 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGA1P17096 KRT18P43-201ENST00000469825 1281 ntBASIC16.46■□□□□ 0.23
HMGA1P17096 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGA1P17096 AL049840.4-201ENST00000602422 811 ntBASIC16.46■□□□□ 0.23
HMGA1P17096 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGA1P17096 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 INTS4P2-202ENST00000614726 2019 ntBASIC16.46■□□□□ 0.23
HMGA1P17096 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.46■□□□□ 0.23
HMGA1P17096 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
HMGA1P17096 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGA1P17096 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.46■□□□□ 0.22
HMGA1P17096 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
HMGA1P17096 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HMGA1P17096 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
HMGA1P17096 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGA1P17096 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGA1P17096 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGA1P17096 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGA1P17096 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGA1P17096 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGA1P17096 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGA1P17096 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGA1P17096 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HMGA1P17096 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
HMGA1P17096 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HMGA1P17096 MIR1909-201ENST00000411312 80 ntBASIC16.45■□□□□ 0.22
HMGA1P17096 ACTG1P3-201ENST00000431775 1114 ntBASIC16.45■□□□□ 0.22
HMGA1P17096 VDAC1P7-201ENST00000462417 847 ntBASIC16.45■□□□□ 0.22
HMGA1P17096 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGA1P17096 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGA1P17096 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGA1P17096 AC120045.2-201ENST00000567334 178 ntBASIC16.45■□□□□ 0.22
HMGA1P17096 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGA1P17096 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGA1P17096 MIR5189-201ENST00000577370 114 ntBASIC16.45■□□□□ 0.22
HMGA1P17096 BTNL10-201ENST00000595971 695 ntBASIC16.45■□□□□ 0.22
HMGA1P17096 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HMGA1P17096 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGA1P17096 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGA1P17096 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.45■□□□□ 0.22
HMGA1P17096 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGA1P17096 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGA1P17096 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
HMGA1P17096 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGA1P17096 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGA1P17096 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGA1P17096 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGA1P17096 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGA1P17096 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGA1P17096 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
HMGA1P17096 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 AC119751.2-201ENST00000504529 210 ntBASIC16.44■□□□□ 0.22
HMGA1P17096 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HMGA1P17096 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGA1P17096 ENPP7P5-201ENST00000541031 1031 ntBASIC16.44■□□□□ 0.22
HMGA1P17096 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGA1P17096 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGA1P17096 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HMGA1P17096 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGA1P17096 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HMGA1P17096 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HMGA1P17096 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms