Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM1P09493 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TPM1P09493 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.73■□□□□ 0.43
TPM1P09493 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.73■□□□□ 0.43
TPM1P09493 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM1P09493 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM1P09493 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
TPM1P09493 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TPM1P09493 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TPM1P09493 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TPM1P09493 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.72■□□□□ 0.43
TPM1P09493 DUSP5P1-201ENST00000441325 1139 ntBASIC17.72■□□□□ 0.43
TPM1P09493 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.72■□□□□ 0.43
TPM1P09493 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.72■□□□□ 0.43
TPM1P09493 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.72■□□□□ 0.43
TPM1P09493 AL365330.1-201ENST00000607459 531 ntBASIC17.72■□□□□ 0.43
TPM1P09493 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.72■□□□□ 0.43
TPM1P09493 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
TPM1P09493 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM1P09493 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TPM1P09493 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.71■□□□□ 0.43
TPM1P09493 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM1P09493 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TPM1P09493 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM1P09493 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM1P09493 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
TPM1P09493 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.71■□□□□ 0.43
TPM1P09493 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
TPM1P09493 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TPM1P09493 AC073621.1-201ENST00000392730 636 ntBASIC17.71■□□□□ 0.43
TPM1P09493 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.71■□□□□ 0.43
TPM1P09493 AC245100.5-201ENST00000452108 331 ntBASIC17.71■□□□□ 0.43
TPM1P09493 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM1P09493 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM1P09493 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM1P09493 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.71■□□□□ 0.43
TPM1P09493 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM1P09493 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.42
TPM1P09493 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
TPM1P09493 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.71■□□□□ 0.42
TPM1P09493 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 AC007292.2-201ENST00000593524 1812 ntBASIC17.7■□□□□ 0.42
TPM1P09493 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.7■□□□□ 0.42
TPM1P09493 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.7■□□□□ 0.42
TPM1P09493 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TPM1P09493 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.7■□□□□ 0.42
TPM1P09493 AC073648.2-201ENST00000510116 352 ntBASIC17.7■□□□□ 0.42
TPM1P09493 AC005593.1-201ENST00000624894 515 ntBASIC17.7■□□□□ 0.42
TPM1P09493 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC17.7■□□□□ 0.42
TPM1P09493 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.7■□□□□ 0.42
TPM1P09493 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
TPM1P09493 AC011477.6-201ENST00000604980 1927 ntBASIC17.7■□□□□ 0.42
TPM1P09493 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.7■□□□□ 0.42
TPM1P09493 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM1P09493 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms