Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 AC105250.1-201ENST00000509378 2057 ntBASIC11.78□□□□□ -0.52
SMKR1H3BMG3 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 PARN-202ENST00000420015 2360 ntTSL 2 BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 AC005840.4-201ENST00000541242 2494 ntBASIC11.78□□□□□ -0.52
SMKR1H3BMG3 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
SMKR1H3BMG3 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 SRC-202ENST00000373558 4304 ntTSL 5 BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SMKR1H3BMG3 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 PAWRP1-201ENST00000451083 565 ntBASIC11.77□□□□□ -0.53
SMKR1H3BMG3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 TK2-213ENST00000563369 882 ntTSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 AC073592.4-201ENST00000623827 446 ntBASIC11.77□□□□□ -0.53
SMKR1H3BMG3 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 AC067750.1-201ENST00000608826 6545 ntBASIC11.77□□□□□ -0.53
SMKR1H3BMG3 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 AC233702.3-201ENST00000578656 1387 ntBASIC11.77□□□□□ -0.53
SMKR1H3BMG3 AGAP7P-201ENST00000582299 2062 ntBASIC11.77□□□□□ -0.53
SMKR1H3BMG3 AGAP14-201ENST00000624701 2060 ntBASIC11.77□□□□□ -0.53
SMKR1H3BMG3 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 AC073508.3-201ENST00000619697 1419 ntBASIC11.77□□□□□ -0.53
SMKR1H3BMG3 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SMKR1H3BMG3 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 NSUN5P1-202ENST00000421140 1535 ntBASIC11.76□□□□□ -0.53
SMKR1H3BMG3 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 NSUN5P2-203ENST00000457352 1529 ntBASIC11.76□□□□□ -0.53
SMKR1H3BMG3 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SMKR1H3BMG3 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms