Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC9Q9Y3X0 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 KRTAP10-13P-201ENST00000412914 571 ntBASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 FAM197Y7-201ENST00000432892 766 ntBASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 KRT18P64-201ENST00000434946 1219 ntBASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 RN7SL769P-201ENST00000469386 295 ntBASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 ACR-203ENST00000529621 708 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 RHBDF1P1-201ENST00000427504 1941 ntBASIC21.16■□□□□ 0.98
CCDC9Q9Y3X0 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 AC078819.1-201ENST00000547454 765 ntBASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 AC012085.1-201ENST00000548270 765 ntBASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 EEF1DP1-201ENST00000585891 896 ntBASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC9Q9Y3X0 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 KRT8P19-201ENST00000551916 1455 ntBASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 KRT8P37-201ENST00000451609 1420 ntBASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
CCDC9Q9Y3X0 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 HOMER2P2-201ENST00000451621 847 ntBASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 TMEM198B-204ENST00000484016 896 ntBASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 CROCCP1-201ENST00000426910 5675 ntBASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC9Q9Y3X0 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms