Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 AC093813.1-201ENST00000605066 256 ntBASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.21■□□□□ 0.67
ZC3H4Q9UPT8 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 AC011676.5-201ENST00000624864 2660 ntBASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 MIR769-201ENST00000390225 118 ntBASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 AC008267.1-201ENST00000474858 1069 ntBASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 NKG7-204ENST00000595217 816 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZC3H4Q9UPT8 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 AL031731.1-201ENST00000642131 2094 ntBASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 AC018735.1-201ENST00000437208 1502 ntBASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 AC026410.3-201ENST00000514280 936 ntBASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ZC3H4Q9UPT8 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 AL691432.1-201ENST00000596308 1422 ntBASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZC3H4Q9UPT8 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms